A B C D E F G H I J L M N O P Q R S T U V W X Z _

A

ABORT - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressInstruction

abort the whole pipeline altogether

AbstractDRMConnectorManager - Class in org.icenigrid.gridsam.core.plugin.connector.common

Created by IntelliJ IDEA.

AbstractDRMConnectorManager() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.AbstractDRMConnectorManager

AbstractFileProviderSupport - Class in org.icenigrid.gridsam.core.plugin.transfer.provider

Purpose:
this class implements the interface FileProvider.

AbstractFileProviderSupport() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.provider.AbstractFileProviderSupport

AbstractJobManagerTestCase - Class in org.icenigrid.gridsam.integration.common

AbstractJobManagerTestCase(String) - Constructor for class org.icenigrid.gridsam.integration.common.AbstractJobManagerTestCase

create a new AbstractJobManagerTestCase

AbstractJobSubmissionTestCase - Class in org.icenigrid.gridsam.integration.common

AbstractJobManager testcase

AbstractJobSubmissionTestCase(String) - Constructor for class org.icenigrid.gridsam.integration.common.AbstractJobSubmissionTestCase

create a new AbstractJobSubmissionTestCase

AbstractShell - Class in org.icenigrid.gridsam.core.plugin.shell

Abstract implementation of Shell

AbstractShell() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.AbstractShell

AbstractShell.PipeRunnable - Class in org.icenigrid.gridsam.core.plugin.shell

a runnable that takes input from an ReadableByteChannel and write the input to the WritableByteChannel

AbstractShell.PipeRunnable(InputStream, int, CommandListener) - Constructor for class org.icenigrid.gridsam.core.plugin.shell.AbstractShell.PipeRunnable

pipe input from pInputChannel to pOutputChannel

AbstractShellStage - Class in org.icenigrid.gridsam.core.plugin.connector.fork

An abstract DRMConnector stage that requires a Shell to operate

AbstractShellStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.fork.AbstractShellStage

AbstractSupportManager - Class in org.icenigrid.gridsam.core.support

Purpose:
A factory class to provide all providers of the host environment.

AbstractSupportManager() - Constructor for class org.icenigrid.gridsam.core.support.AbstractSupportManager

AbstractTransferAgent - Class in org.icenigrid.gridsam.core.plugin.transfer.protocol

Abstract Class of all kinds of transfer agents.

AbstractTransferAgent() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.protocol.AbstractTransferAgent

AccumulatedCommandListener - Class in org.icenigrid.gridsam.core.plugin.shell

CommandListener implementation that accumulates the output/error stream data as a string

AccumulatedCommandListener() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.AccumulatedCommandListener

ACTIVE - Static variable in class org.icenigrid.gridsam.core.JobState

The job has received resource, and the application is executing

ACTIVE_DATA_CONNECTION_MODE - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

FTP CONNECTION MODE : ACTIVE .

addArgument(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

Add a new argument into the arguments list.

addCalendar(String, Calendar, boolean, boolean) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

addCapabilities(Collection) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystem

Adds the capabilities of this file system.

addCondorEventListener(CondorEventListener) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

add a CondorEventListener

addElement(AuthorisationRule) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.AndRule

add a disjunction as a conjunct

addElement(NamePattern) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.Group

add a pattern element

addElement(Group) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.Groups

add a group

addElement(AuthorisationRule) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.NegationRule

add a named group element

addElement(AuthorisationRule) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.OrRule

add a named group element

addElement(PublicKeyAuthenticationConfig) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

addElement(PasswordAuthenticationConfig) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

addEnvironment(String, String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

Add a environment name-value pair.

addGlobalJobListener(JobListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

addGlobalTriggerListener(TriggerListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

addJob(JobDetail, boolean) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

addJobListener(JobListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

addJobStage(JobState, String) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

add a job stage

addSchedulerListener(SchedulerListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

addStageIn(String, String, String, boolean) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

Add StageIn Description Object into the StageIn List.

addStageIn(String, String) - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

add stagein file.

addStageOut(String, String, String, boolean) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

Add StageOut Description Object into the StageOut List.

addStageOut(String, String) - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

add stage out file.

addTriggerListener(TriggerListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

advanceJobState(JobState, String) - Method in interface org.icenigrid.gridsam.core.MutableJobInstance

advance the state of this job to pState

advanceJobState(JobState, String) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

advance the state of this job to pState

afterTransactionBegin(Transaction) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

afterTransactionCompletion(Transaction) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

AFTFileProviderSupport - Class in org.icenigrid.gridsam.core.plugin.transfer.provider

Purpose:
this class implements interrupt and submit Method for AFT.

AFTFileProviderSupport() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.provider.AFTFileProviderSupport

AFTFileTransferJob - Class in org.icenigrid.gridsam.core.plugin.transfer.provider

This class implements InterruptableJob .

AFTFileTransferJob() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.provider.AFTFileTransferJob

AFTJOB_ACTION - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

AFTJOB_STATUS - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

aftJobExecutionCheck(JobExecutionContext, FileJobInfo) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.provider.FileProcessHelper

this method can check the AftJobs' status in the scheduler, if AftJobs' status are "terminate status"(such as COMPLETED, FAILED, CANCELLED), no need to excute the AftJobs, just need to delete the AftJobs from the Scheduler

aftJobWasExecuted(JobExecutionContext) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.provider.FileProcessHelper

when a AftJob is completely, this method can change the AftJob's statu to COMPLETED and delete the AftJob from the scheduler

aftJobWasFailled(JobExecutionContext, Exception) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.provider.FileProcessHelper

when a AftJob is failed, this method can change the AftJob's statu to FAILED and delete the AftJob from the scheduler

AllowRule - Class in org.icenigrid.gridsam.core.plugin.manager.auth.simple

AllowRule() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.auth.simple.AllowRule

ALWAYS_ABORT_CRITERIA - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

criteria implementation that will always stop progress

ALWAYS_PROGRESS_CRITERIA - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

criteria implementation that will always progress

AlwaysFailDRMConnector - Class in org.icenigrid.gridsam.core.plugin.connector.common

A DRMConnector that always fail.

AlwaysFailDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.AlwaysFailDRMConnector

AlwaysFailFileSystemProvider - Class in org.icenigrid.gridsam.core.plugin.connector.common

FileSystemProvider implementation that always fail

AlwaysFailFileSystemProvider() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.AlwaysFailFileSystemProvider

ANCESTOR_JOB_ID - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

AndRule - Class in org.icenigrid.gridsam.core.plugin.manager.auth.simple

AndRule() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.auth.simple.AndRule

create an AndRule

APP_NAME - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

APP_VERSION - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

append(FileObject, FileObject) - Static method in class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport

copy the content of a virtual file from pFrom to another (optionally append the file content to the end of the pTo file) Note.

assemble(Serializable, Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum

assertMatches(XmlObject, String) - Static method in class org.icenigrid.gridsam.core.jsdl.JSDLSupport

assert that the xml document matches with the given XPath expression (i.e.

assertSuccessfulSubmission(String, long) - Method in class org.icenigrid.gridsam.integration.common.AbstractJobManagerTestCase

submit a job that is expected to reach the done stage in pWait number of milliseconds

assertTerminatedSubmission(String, long) - Method in class org.icenigrid.gridsam.integration.common.AbstractJobManagerTestCase

submit a job that is expected to reach the done stage in pWait number of milliseconds

assertUnsuccessfulSubmission(String, long) - Method in class org.icenigrid.gridsam.integration.common.AbstractJobManagerTestCase

submit a job that is expected reach the fail stage in pWait number of milliseconds

Authorisation - Interface in org.icenigrid.gridsam.core.plugin.manager.auth

AuthorisationException - Exception in org.icenigrid.gridsam.core.plugin.manager.auth

AuthorisationException() - Constructor for exception org.icenigrid.gridsam.core.plugin.manager.auth.AuthorisationException

AuthorisationException(String) - Constructor for exception org.icenigrid.gridsam.core.plugin.manager.auth.AuthorisationException

AuthorisationException(Throwable) - Constructor for exception org.icenigrid.gridsam.core.plugin.manager.auth.AuthorisationException

AuthorisationException(String, Throwable) - Constructor for exception org.icenigrid.gridsam.core.plugin.manager.auth.AuthorisationException

AuthorisationRule - Interface in org.icenigrid.gridsam.core.plugin.manager.auth.simple

authorise(Subject, JobDefinitionDocument) - Method in interface org.icenigrid.gridsam.core.plugin.manager.auth.Authorisation

authorise the subject for the submission of the given job descripion

authorise(Subject, JobDefinitionDocument) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.DefaultAuthorisation

B

BASIC_SITE_INFO_IP - Static variable in class org.icenigrid.gridsam.core.support.SupportContants

key of the ip in site info

BASIC_SITE_INFO_PORT - Static variable in class org.icenigrid.gridsam.core.support.SupportContants

key of the port in the site info

BATCH_BLAST_HOME - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

BATCH_BLAST_PROPERTIES - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

BATCH_CACHE_PATH - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

BATCH_CLIENT_WSDD - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

BATCH_DATA_HOME - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

BATCH_HOME - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

BATCH_LOG_DEF_DIR - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

BATCH_SCRIPTS_HOME - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

BATCH_SERVICE_PROPERTIES - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

BATCH_SERVICE_PROPERTIES_NAME - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

BATCH_USER_DATA_HOME - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

BatchConstants - Class in org.icenigrid.gridsam.core.util

Purpose:
the utility class for the batch system.

BatchConstants() - Constructor for class org.icenigrid.gridsam.core.util.BatchConstants

BatchJobJSDLDesc - Class in org.icenigrid.gridsam.core.util.legacy

batch job jsdl description.

BatchJobJSDLDesc() - Constructor for class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

default constructor.

BatchJobJSDLDesc(JobDefinitionDocument) - Constructor for class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

constructor with jsdl document.

BatchJobJSDLDesc(String) - Constructor for class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

constructor with jsdl content String.

BatchJobJSDLDesc(File) - Constructor for class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

constructor with jsdl file.

BATCHUTIL_CLASSNAME - Static variable in interface org.icenigrid.gridsam.core.plugin.transfer.protocol.TransferAgent

BatchUtils

BatchUtils - Class in org.icenigrid.gridsam.core.util

Purpose:
Provide some utilities for the ease of manipulating the batch system

BatchUtils() - Constructor for class org.icenigrid.gridsam.core.util.BatchUtils

beforeTransactionCompletion(Transaction) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

begin() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore

begin a persistence store transaction

begin() - Method in interface org.icenigrid.gridsam.core.plugin.PersistenceStore

begin a persistence store transaction

BES_FACTORY_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

- V.Novov - HPC Profile Compliance Code - START --> Add new namespace strings

BES_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

the BES namespace string

BUFFER_LENGTH - Static variable in interface org.icenigrid.gridsam.core.plugin.transfer.protocol.TransferAgent

length of the buffer to cache the file stream .

buildJobManager() - Method in interface org.icenigrid.gridsam.core.JobManagerBuilder

build a job manager instance from the information collected by this object

C

cancel(String, String, String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To cancel local batch job.

cancelFileJob(String) - Method in class org.icenigrid.gridsam.core.hostenv.FileProviderUtil

cancel file-transfer job.

cancelJob(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.AbstractFileProviderSupport

cancel an FileJob: when an FileJob is runing or to be run or stopped, we can cancel the FileJob, and when a FileJob is cancelled, it won't be restart again.Only When the FileJob's status is RUN or BEGIN or PAUSED can we pause the FileJob.When cancel the FileJob, its status will turn to CANCELED.

cancelJob(String) - Method in interface org.icenigrid.gridsam.core.support.FileProvider

Cancel a job, then the transfer process will stop.

CAPABILITIES - Static variable in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileProvider

capabilities

catFile(String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To cat the content of the indicated file, which is owned by targer user.

changeFileJobBeginTime(String, String) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

change AftJob begin time in dateBase

changeFileJobBeginTime(String, String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

changeFileJobEndTime(String, String) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

change AftJob end time in dateBase

changeFileJobEndTime(String, String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

changeFileJobOtherInfo(String, String) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

change AftJob otherInfo in dateBase

changeFileJobOtherInfo(String, String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

changeFileJobResponseInfo(String, String) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

change AftJob responseInfo in dateBase

changeFileJobResponseInfo(String, String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

changeFileJobRetryCount(String, int) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

change AftJob retryCount in dateBase

changeFileJobRetryCount(String, int) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

changeFileJobStatus(String, String) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

change AftJob status in dateBase

changeFileJobStatus(String, String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

changeFileJobTotalFileLength(String, long) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

change AftJob total file length in dateBase

changeFileJobTotalFileLength(String, long) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

changeFileJobTransferredFileLength(String, long) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

change AftJob transferred file length in dateBase

changeFileJobTransferredFileLength(String, long) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

changeOriginalFileJobTotalFileLength(String, long) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

change original file length in dateBase

changeOriginalFileJobTotalFileLength(String, long) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

changeOriginalFileLengthInDataBase(String, long) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.AbstractTransferAgent

change totalLength in the dataBase

changeTotalLengthInDataBase(String, long) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.AbstractTransferAgent

change totalLength in the dataBase

changeTransferredLengthInDataBase(String, long) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.AbstractTransferAgent

change transferredLength in the dataBase

chmod(String, String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To chmod this directory.

chown(String, String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

to change stagein-file's owner to localUser.

cleanUpStageOutFile(String, String) - Static method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStageUtil

cleanUpTempDir(String) - Static method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStageUtil

cleanupThread() - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

CLIENT_WSDD - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

close() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore

close the persistence store connection

close() - Method in interface org.icenigrid.gridsam.core.plugin.PersistenceStore

close the persistence store

close() - Method in class org.icenigrid.gridsam.core.plugin.shell.local.LocalShell

close this shell and release all used resources

close() - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell

close this shell and release all used resources

close() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell

close this shell and release all used resources

closeSession() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore

close the current hibernate session

CLUSTER - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

CommandListener - Interface in org.icenigrid.gridsam.core.plugin.shell

A listener interface that receives data made available to a process's output or error stream

commit() - Method in interface org.icenigrid.gridsam.core.plugin.Transaction

commit a previously started transaction

COMMON_BATCH_APP - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

compare(Object, Object) - Method in class org.icenigrid.gridsam.core.JobStageComparator

Compares its two arguments for order.

compareTo(Object) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.InlineProperties

Compares this object with the specified object for order.

CondorEventAdapter - Class in org.icenigrid.gridsam.core.plugin.connector.condor

Adapter class for CondorEventListener interface

CondorEventAdapter() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventAdapter

default constructor.

CondorEventAdapter(String[]) - Constructor for class org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventAdapter

1-arg constructor

CondorEventListener - Interface in org.icenigrid.gridsam.core.plugin.connector.condor

Interface representing a listener for condor event

CONF_LOCATION - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

ConfigurationException - Exception in org.icenigrid.gridsam.core

Extension to JobManagerException that indicates a configuration error

ConfigurationException() - Constructor for exception org.icenigrid.gridsam.core.ConfigurationException

Constructs a new exception with null as its detail message.

ConfigurationException(String) - Constructor for exception org.icenigrid.gridsam.core.ConfigurationException

Constructs a new exception with the specified detail message.

ConfigurationException(String, Throwable) - Constructor for exception org.icenigrid.gridsam.core.ConfigurationException

Constructs a new exception with the specified detail message and cause.

ConfigurationException(Throwable) - Constructor for exception org.icenigrid.gridsam.core.ConfigurationException

Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).

ConfigUtil - Class in org.icenigrid.gridsam.core.hostenv

Purpose:
A utility class to find out the ConfigUtilProvider and deal with configuration files.

ConfigUtil(String) - Constructor for class org.icenigrid.gridsam.core.hostenv.ConfigUtil

Construct the ConfigUtil object from a config file name.

ConfigUtilProvider - Interface in org.icenigrid.gridsam.core.support

Purpose:
To deal with a specified format configuration.

ConfigUtilSupport - Class in org.icenigrid.gridsam.core.support.omii

Purpose:
To implement ConfigUtilProvider interface using XML config file.

ConfigUtilSupport() - Constructor for class org.icenigrid.gridsam.core.support.omii.ConfigUtilSupport

containsConfiguration(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

containsService(Class) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

containsService(String, Class) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

CONTINUE - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressInstruction

continue with the recurring task if it is not finished or skip to the next stage if the task would be finishing

ControlException - Exception in org.icenigrid.gridsam.core

Exception thrown when there is an error in the job submission process

ControlException() - Constructor for exception org.icenigrid.gridsam.core.ControlException

Constructs a new exception with null as its detail message.

ControlException(String) - Constructor for exception org.icenigrid.gridsam.core.ControlException

Constructs a new exception with the specified detail message.

ControlException(String, Throwable) - Constructor for exception org.icenigrid.gridsam.core.ControlException

Constructs a new exception with the specified detail message and cause.

ControlException(Throwable) - Constructor for exception org.icenigrid.gridsam.core.ControlException

Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).

convertdateStringTolong(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.DateTypeConvert

Convert the time's format from String to long

convertDateTolong(Date) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.DateTypeConvert

Convert the time's format from Date to long

convertDateToString(Date) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.DateTypeConvert

Convert the time's format from Date to String

convertStringToDate(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.DateTypeConvert

Convert the time's format from String to Date

copy(FileObject, FileObject) - Static method in class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport

copy the content of a virtual file from pFrom to another virtual file pTo

copyContent(String, String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To read the content of source file and write to the target file.

copyFileToFile(FileObject, FileObject, boolean) - Static method in class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport

copy the content of a virtual file from pFrom to another (optionally append the file content to the end of the pTo file) Note.

copyStageOutToTemp(String, String, String, String, String) - Static method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStageUtil

CPU_TIME - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

createFile() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject

Creates this file, if it does not exist.

createFile(FileName) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystem

Creates a file object.

createFileJobInfoInstance(FileJobInfo) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

Add function : save a new AftJobInfo Record to the database.

createFileJobInfoInstance(FileJobInfo) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

Add function : save a new AftJobInfo Record to the database.

createJobInstance() - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore

create a new job instance.

createJobInstance() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

create a new job instance.

createJobManager() - Method in class org.icenigrid.gridsam.integration.common.AbstractJobManagerTestCase

get the jobmanager instance for testing

createJobName() - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.HashFunction

Create a global unique ID which is generated by system.

createJSDLDocumentDom4j() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

Create a JSDL Dom4j Document from the value within JSDLUtility Object.

createRegistry() - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

create the underlying registry.

createRegistry() - Method in class org.icenigrid.gridsam.core.plugin.manager.ResourceRegistry

create the underlying registry.

createStandardFileSystemOptions(JobContext) - Static method in class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport

create a standard set of file system options

createStandardFileSystemOptions(GSSCredential) - Static method in class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport

create a standard set of file system options

createStandardFileSystemOptions(MyProxyInfo) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.AbstractTransferAgent

create a standard set of file system options

createStandardFileSystemOptions() - Static method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.AbstractTransferAgent

create a standard set of file system options

createStandardFileSystemOptions(GSSCredential) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.AbstractTransferAgent

create a standard set of file system options

D

DateTypeConvert - Class in org.icenigrid.gridsam.core.plugin.transfer.util

Purpose:
This is a Date Convert Class.

DateTypeConvert() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.util.DateTypeConvert

DEBUG_FLAG_NAME - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

DEBUG_FLAG_VALUE - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

deepCopy(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum

Return a deep copy of the persistent state, stopping at entities and at collections.

DEFAULT - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

DEFAULT_DELAY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

DEFAULT_FTP_PORT - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

FTP's default port .

DEFAULT_LIFETIME - Static variable in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport

default MyProxy lifetime

DEFAULT_LOCAL_MODE - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

DEFAULT_PORT - Static variable in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport

default MyProxy port

DEFAULT_RETRY - Static variable in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMStatusStage

number of retry when the globus gatekeeper is not responding (error code 79)

DEFAULT_RETRY - Static variable in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStatusStage

number of retry when the globus gatekeeper is not responding (error code 79).

DEFAULT_RETRY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

DefaultAuthorisation - Class in org.icenigrid.gridsam.core.plugin.manager.auth.simple

Authorisation implementation that loads the authorisation rules from a static souce

DefaultAuthorisation(List) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.auth.simple.DefaultAuthorisation

create a StaticAuthorisation with the given set of rules

DefaultCommandListener - Class in org.icenigrid.gridsam.core.plugin.shell

Default implementation of CommandListener.

DefaultCommandListener() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.DefaultCommandListener

private constructor

DefaultFileSystemProvider - Class in org.icenigrid.gridsam.core.plugin.connector.common

Default FileSystemProvider implementation that resolves the file system using the supplied root URI

DefaultFileSystemProvider() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.DefaultFileSystemProvider

DefaultInterceptor - Class in org.icenigrid.gridsam.core.plugin.persistence.hibernate

Default implementation of the Hibernate Interceptor

DefaultInterceptor() - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

DefaultJobContext - Class in org.icenigrid.gridsam.core.plugin.manager

Default implementation of JobContext

DefaultJobContext(Registry, MutableJobInstance, boolean) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

create a DefaultJobContext

DefaultJobManager - Class in org.icenigrid.gridsam.core.plugin.manager

Default implementation of the JobManager interface

DefaultJobManager() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

create a DefaultJobManager

DefaultJobManager(String) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

create a DefaultJobManager with a configuration resources

DefaultJobManager(String[]) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

create a DefaultJobManager with a list of configuration resources

DefaultJobManagerContext - Class in org.icenigrid.gridsam.core.plugin.manager

Default implementation of JobManagerContext

DefaultJobManagerContext(Registry) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

create a DefaultJobManagerContext

DefaultJobManagerContext.StageTask - Class in org.icenigrid.gridsam.core.plugin.manager

A Quartz Job that executes a DRMConnector

DefaultJobManagerContext.StageTask() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext.StageTask

DefaultJobManagerMBean - Interface in org.icenigrid.gridsam.core.plugin.manager

MBean interface for DefaultJobManager

DefaultJobStage - Class in org.icenigrid.gridsam.core.plugin.persistence.common

Default implementation of JobStage

DefaultJobStage() - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage

DefaultMutableJobInstance - Class in org.icenigrid.gridsam.core.plugin.persistence.common

Default implementation of MutableJobInstance

DefaultMutableJobInstance() - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

DelegatingDRMConnectorManager - Class in org.icenigrid.gridsam.core.plugin.manager

Implementation of DRMConnectorManager that delegates the functionality to another DRMConnectorManager

DelegatingDRMConnectorManager(DRMConnectorManager) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DelegatingDRMConnectorManager

create a DelegatingDRMConnectorManager

DelegatingFileSystemProvider - Class in org.icenigrid.gridsam.core.plugin.connector.common

A FileSystemProvider implementation that delegates responsibility to another FileSystemProvider

DelegatingFileSystemProvider() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.DelegatingFileSystemProvider

DELETE_FILEJOB_FAULT - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

String .

deleteCalendar(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

deleteFile(String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To delete the indicated dir or file.

deleteFileJobInfoInstance(FileJobInfo) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

Delete function : delete AftJobInfo Records from the database.

deleteFileJobInfoInstance(FileJobInfo) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

Delete function : delete AftJobInfo Records from the database.

deleteJob(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

deleteJob(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.AbstractFileProviderSupport

delete an FileJob record: when a FileJob is failed or cancelled or completed, this FileJob's record may never used again, so we can use this function to delete an FileJob record.

deleteJob(String) - Method in interface org.icenigrid.gridsam.core.support.FileProvider

Delete a file-transfer job, then we can't find the job infomation.

deleteJobInstance(MutableJobInstance) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore

delete a job instance from the store

deleteJobInstance(MutableJobInstance) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

delete a job instance from the store

deleteTempAfterFailed(JobInstance) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To delete the temp dir after setting the job as failed! Just try once :)

DenyRule - Class in org.icenigrid.gridsam.core.plugin.manager.auth.simple

DenyRule() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.auth.simple.DenyRule

destroy() - Method in interface org.icenigrid.gridsam.core.plugin.shell.Process

Kills the subprocess.

detail(String, String, String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To get the details of the indicated local batch job.

disassemble(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum

DISK_SPACE - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

disposeAgent() - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.FTPTransferAgent

close the socket and logout ftp.

disposeAgent() - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.HTTPTransferAgent

stop HTTP transfer

disposeAgent() - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.LocalFileAgent

disposeAgent() - Method in interface org.icenigrid.gridsam.core.plugin.transfer.protocol.TransferAgent

stop transferring file

disposeAgent() - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.VFSTransferAgent

stop the transfer.

doCloseCommunicationLink() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystem

Close the underlaying link used to access the files

doCreateFileSystem(FileName, FileSystemOptions) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileProvider

Creates a FileSystem.

doCreateFolder() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject

Creates this file as a folder.

doDelete() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject

Deletes the file.

doGetContentSize() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject

Returns the size of the file content (in bytes).

doGetInputStream() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject

Creates an input stream to read the file content from.

doGetOutputStream(boolean) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject

Creates an output stream to write the file content to.

doGetType() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject

Determines the type of this file.

doListChildren() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject

Lists the children of this file.

DONE - Static variable in class org.icenigrid.gridsam.core.JobState

The job has completed successfully

DoneStage - Class in org.icenigrid.gridsam.core.plugin.connector.common

A terminal stage that marks the job as done

DoneStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.DoneStage

doPBSJob(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStage

execute job through this DRMConnector.

doProcess(String, String, String, String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

do post process in job working directory.

doRename(FileObject) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject

Renames the file.

doSchedule(DRMConnectorDescriptor) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

schedule an execution of a DRMConnector defined by the descriptor

doSetAttribute(String, Object) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject

Sets an attribute of this file.

DRIVER_SCRIPT - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

DriverResponseParser - Class in org.icenigrid.gridsam.core.util

Purpose:
This class is parser of the response from driver.

DriverResponseParser(String, String, String) - Constructor for class org.icenigrid.gridsam.core.util.DriverResponseParser

construct the command response.

DrmaaDRMConnector - Class in org.icenigrid.gridsam.core.plugin.connector.drmaa

MultiStageDRMConnector implementation that performs DRMAA submission

DrmaaDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnector

default constructor

DrmaaDRMConnectorManager - Class in org.icenigrid.gridsam.core.plugin.connector.drmaa

DRMConnectorBuilder implementation for the shell-based condor integration

DrmaaDRMConnectorManager() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnectorManager

DrmaaStatusStage - Class in org.icenigrid.gridsam.core.plugin.connector.drmaa

DRMConnector implementation that checks DRMAA job status

DrmaaStatusStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaStatusStage

DrmaaSubmissionStage - Class in org.icenigrid.gridsam.core.plugin.connector.drmaa

DRMConnector implementation that submits job through DRMAA

DrmaaSubmissionStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaSubmissionStage

DrmaaTerminateStage - Class in org.icenigrid.gridsam.core.plugin.connector.drmaa

DRMConnector implementation for performing DRMAA job termination

DrmaaTerminateStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaTerminateStage

DRMConnector - Interface in org.icenigrid.gridsam.core.plugin

Interface defining the pluggable component in GridSAM responsible for launching a job instance onto a Distributed Resource Management system.

DRMConnectorDescriptor - Class in org.icenigrid.gridsam.core.plugin.manager

Bean class describing a DRMConnector

DRMConnectorDescriptor(String, String) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor

create a DRMConnectorDescriptor that resolves a DRMConnector instance from a name

DRMConnectorDescriptor(DRMConnector, String) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor

create a DRMConnectorDescriptor that is associate directly to a DRMConnector instance

DRMConnectorManager - Interface in org.icenigrid.gridsam.core.plugin

A DRMConnectorManager defines the interface of a manager to instances of DRMConnector.

dst() - Method in class org.icenigrid.gridsam.core.util.legacy.FileStageDesc

E

ENTERPRISE_UN - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

equals(Object) - Method in class org.icenigrid.gridsam.core.JobState

equality check

equals(Object) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressInstruction

equality check

equals(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage

Indicates whether some other object is "equal to" this one.

equals(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

Indicates whether some other object is "equal to" this one.

equals(Object, Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum

Compare two instances of the class mapped by this type for persistence "equality".

ERROR_INFO - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

evaluate(Subject, JobDefinitionDocument) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.AndRule

evaluate(Subject, JobDefinitionDocument) - Method in interface org.icenigrid.gridsam.core.plugin.manager.auth.simple.AuthorisationRule

evaluate whether the subject is authorised to submit the given job descripion

evaluate(Subject, JobDefinitionDocument) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.FalseRule

evaluate(Subject, JobDefinitionDocument) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.NamedGroupRule

evaluate(Subject, JobDefinitionDocument) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.NegationRule

evaluate(Subject, JobDefinitionDocument) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.OrRule

evaluate(Subject, JobDefinitionDocument) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.TrueRule

evaluate(Subject, JobDefinitionDocument) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.XPathRule

EVENTS - Static variable in class org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventAdapter

all event codes and associated description

execProcess(String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

execute the command-line command in the home directory _homedir.

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.AlwaysFailDRMConnector

execute a job through this DRMConnector

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DoneStage

Launch a job through this DRMConnector

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector

execute a job through this DRMConnector

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.JobIdentificationStage

launch a job

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

execute a job through this DRMConnector

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.NullDRMConnector

execute a job through this DRMConnector

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.TerminalStage

Launch a job through this DRMConnector

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.ValidatingStage

launch a job

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage

execute this stage

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemCleanupStage

launch a job

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemInitStage

launch a job

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.StageInStage

launch a job

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.StageInStatusStage

launch a job.

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.StageInSubmitStage

launch a job.

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.StageOutStage

launch a job

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.StageOutStatusStage

launch a job

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.StageOutSubmitStage

launch a job.

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.TempFileSystemCleanupStage

Launch the job to clean up temp files.

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.TempFileSystemInitStage

Launch a job to init the temp directory.

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaStatusStage

execute a job through this DRMConnector

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaSubmissionStage

launch a job

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaTerminateStage

execute a job through this DRMConnector

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkStage

launch a job

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusInitStage

execute a job through this DRMConnector

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMStatusStage

execute a job through this DRMConnector

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMSubmissionStage

launch a job

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.FileSystemCleanupStage

Launch the job to clean up temp files.

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.FileSystemInitStage

launch a job

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStage

launch a job.

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStatusStage

execute a job through this DRMConnector.

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSTerminalStage

execute a job through this DRMConnector.

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.UserMappingStage

To check the user mapping and store the information in the job properties.

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.PBSStatusStage

execute a job through this DRMConnector

execute(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSSubmitStage

executethis stage

execute(JobContext) - Method in interface org.icenigrid.gridsam.core.plugin.DRMConnector

execute a job through this DRMConnector

execute(JobExecutionContext) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext.StageTask

execute a quartz job.

execute(JobExecutionContext) - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.AFTFileTransferJob

execute the asynchronous file job

execute(FileJobInfo) - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.SFTFileTransferJob

execute the synchronous file job

executeCommand(String, String, Properties) - Method in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell

execute a system process synchronously.

executeCommand(String, String, Properties, String, String) - Method in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell

execute a command synchronously.

executeCommand(String, String, Properties, CommandListener) - Method in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell

execute a command synchronously.

executeCommand(String, String, Properties, String, String, String) - Method in class org.icenigrid.gridsam.core.plugin.shell.POSIXShell

execute a command synchronously.

executeCommand(String, String, Properties) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell

execute a command synchronously.

executeCommand(String, String, Properties, CommandListener) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell

execute a command synchronously.

executeCommand(String, String, Properties, String, String) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell

execute a command synchronously.

executeCommand(String, String, Properties, String, String, String) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell

execute a command synchronously.

executeCommandAsynchronously(String, String, Properties) - Method in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell

execute a system process asynchronously.

executeCommandAsynchronously(String, String, Properties, CommandListener) - Method in class org.icenigrid.gridsam.core.plugin.shell.local.LocalShell

execute a system process asynchronously.

executeCommandAsynchronously(String, String, Properties, String, String) - Method in class org.icenigrid.gridsam.core.plugin.shell.POSIXShell

execute a system process asynchronously.

executeCommandAsynchronously(String, String, Properties, String, String, String) - Method in class org.icenigrid.gridsam.core.plugin.shell.POSIXShell

execute a command synchronously.

executeCommandAsynchronously(String, String, Properties) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell

execute a system process asynchronously.

executeCommandAsynchronously(String, String, Properties, CommandListener) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell

execute a system process asynchronously.

executeCommandAsynchronously(String, String, Properties, String, String) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell

execute a system process asynchronously.

executeCommandAsynchronously(String, String, Properties, String, String, String) - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell

execute a command synchronously.

executeCommandAsynchronously(String, String, Properties, CommandListener) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell

execute a system process asynchronously.

EXECUTED - Static variable in class org.icenigrid.gridsam.core.JobState

The job has been executed (i.e.

EXIT_CODE - Static variable in class org.icenigrid.gridsam.core.StandardJobProperties

exit code

exitValue() - Method in interface org.icenigrid.gridsam.core.plugin.shell.Process

Returns the exit value for the subprocess.

expandSymbols(String, Location) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

extractDirectory(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.URLParser

get the directory Name from the URL

extractFile(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.URLParser

get the file Name from the URL

extractHost(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.URLParser

get the Host

extractHostAndPort(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.URLParser

get the Host and Port from the URL

extractLocalFilePath(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.URLParser

get the localFile's Path from the URL

extractPassword(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.URLParser

get the Password from the URL

extractPort(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.URLParser

get the Port

extractScheme(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.URLParser

get the protocol from the URL

extractUser(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.URLParser

get the User from the URL

extractUserInfo(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.URLParser

get the UserInfo from the URL

F

FAILED - Static variable in class org.icenigrid.gridsam.core.JobState

The job terminated before completion because of an error, user-triggered cancel, or system-triggered cancel

FalseRule - Class in org.icenigrid.gridsam.core.plugin.manager.auth.simple

FalseRule() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.auth.simple.FalseRule

file2String(String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

read the content of a file whose path is given in fn value , and change the format to String.

FILE_ACTION_STAGEIN - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

AftJob transferring action: stageIn .

FILE_ACTION_STAGEOUT - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

AftJob transferring action: stageOut .

FILE_PREFIX - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

FILE_TYPE_ASCII - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

FTP file's type: ASCII .

FILE_TYPE_BINARY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

FTP file's type: BINARY .

FILE_XML_FILE - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

config file.

FileDriverResponseParser - Class in org.icenigrid.gridsam.core.util

Purpose:
The parser class for response of File driver.

FileDriverResponseParser(String, String) - Constructor for class org.icenigrid.gridsam.core.util.FileDriverResponseParser

Construct a response parser instance using the operaion and response content.

FILEDRIVERRESPONSEPARSER_CLASSNAME - Static variable in interface org.icenigrid.gridsam.core.plugin.transfer.protocol.TransferAgent

FileDriverResponseParser

FileJobCancelUtil - Class in org.icenigrid.gridsam.core.util

Purpose:
cancle the file job for the GridSAM Job

FileJobCancelUtil() - Constructor for class org.icenigrid.gridsam.core.util.FileJobCancelUtil

FileJobConstants - Class in org.icenigrid.gridsam.core.plugin.transfer.util

Purpose:
Indetify all the Constants used in AFT System .

FileJobConstants() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

FileJobFailException - Exception in org.icenigrid.gridsam.core.plugin.transfer.exception

Purpose:
this is a Exception class.

FileJobFailException() - Constructor for exception org.icenigrid.gridsam.core.plugin.transfer.exception.FileJobFailException

Constructs a new exception with null as its detail message.The cause is not initialized, and may subsequently be initialized by a call to Throwable.initCause(java.lang.Throwable).

FileJobFailException(String) - Constructor for exception org.icenigrid.gridsam.core.plugin.transfer.exception.FileJobFailException

Constructs a new exception with the specified detail message.

FileJobFailException(String, Throwable) - Constructor for exception org.icenigrid.gridsam.core.plugin.transfer.exception.FileJobFailException

Constructs a new exception with the specified detail message and cause.

FileJobFailException(Throwable) - Constructor for exception org.icenigrid.gridsam.core.plugin.transfer.exception.FileJobFailException

Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).

FileJobInfo - Class in org.icenigrid.gridsam.core.plugin.transfer.persistence

Purpose:
The dataStructure of file job .

FileJobInfo() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

FILEJOBINFO_OBJECT - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

dataBase Name.

FileJobInstanceStore - Interface in org.icenigrid.gridsam.core.plugin.transfer.persistence

Purpose:
hibernate persistence interface

FileJobMapHelper - Class in org.icenigrid.gridsam.core.plugin.transfer.provider

Purpose:
This Class is used to : set the JobDataMap of the AftJob get paremeters from the JobDataMap

FileJobMapHelper() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.provider.FileJobMapHelper

default Constructor .

FileJobMapHelper(JobDataMap) - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.provider.FileJobMapHelper

Constructor with Parameters .

FileJobRetryException - Exception in org.icenigrid.gridsam.core.plugin.transfer.exception

Purpose:
this is a Exception class.

FileJobRetryException() - Constructor for exception org.icenigrid.gridsam.core.plugin.transfer.exception.FileJobRetryException

Constructs a new exception with null as its detail message.The cause is not initialized, and may subsequently be initialized by a call to Throwable.initCause(java.lang.Throwable).

FileJobRetryException(String) - Constructor for exception org.icenigrid.gridsam.core.plugin.transfer.exception.FileJobRetryException

Constructs a new exception with the specified detail message.

FileJobRetryException(String, Throwable) - Constructor for exception org.icenigrid.gridsam.core.plugin.transfer.exception.FileJobRetryException

Constructs a new exception with the specified detail message and cause.

FileJobRetryException(Throwable) - Constructor for exception org.icenigrid.gridsam.core.plugin.transfer.exception.FileJobRetryException

Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).

FileProcessHelper - Class in org.icenigrid.gridsam.core.plugin.transfer.provider

Purpose:
This class is used to notify the AftJob's execute situation.

FileProcessHelper() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.provider.FileProcessHelper

FileProvider - Interface in org.icenigrid.gridsam.core.support

Purpose:
To describe the logic model of asynchronous and reliable file transfer (AFT).

FILEPROVIDER_ASYNCHRONOUS - Static variable in interface org.icenigrid.gridsam.core.support.FileProvider

FILEPROVIDER_SYNCHRONOUS - Static variable in interface org.icenigrid.gridsam.core.support.FileProvider

FileProviderUtil - Class in org.icenigrid.gridsam.core.hostenv

Purpose:
to support different file-transfer module.

FileProviderUtil() - Constructor for class org.icenigrid.gridsam.core.hostenv.FileProviderUtil

constructor.

FileStageDesc - Class in org.icenigrid.gridsam.core.util.legacy

Purpose: This class define structure stage in file and stage out file.

FileStageDesc(String, String) - Constructor for class org.icenigrid.gridsam.core.util.legacy.FileStageDesc

FileSystemCleanupStage - Class in org.icenigrid.gridsam.core.plugin.connector.data

DRMConnector implementation that cleans up the working directory previously created by the ShellInitialisationStage.

FileSystemCleanupStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemCleanupStage

FileSystemCleanupStage - Class in org.icenigrid.gridsam.core.plugin.connector.openpbs

DRMConnector implementation that cleans up the working directory.

FileSystemCleanupStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.openpbs.FileSystemCleanupStage

FileSystemInitStage - Class in org.icenigrid.gridsam.core.plugin.connector.data

DRMConnector implementation that initialises the working directory using the given shell and exposes a job property KEY_WORKING_DIRECTORY with the value of the working directory for the job.

FileSystemInitStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemInitStage

FileSystemInitStage - Class in org.icenigrid.gridsam.core.plugin.connector.openpbs

DRMConnector implementation that initialises the working directory using the given shell and exposes a job property KEY_WORKING_DIRECTORY with the value of the working directory for the job.

FileSystemInitStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.openpbs.FileSystemInitStage

FileSystemProvider - Interface in org.icenigrid.gridsam.core.plugin

Interface for pluggable file system

FileTransferConfig - Class in org.icenigrid.gridsam.core.plugin.transfer.util

FileTransferConfig provides the configuration of retry time and delay time for each supported netwokr protocol.

FileTransferConfig() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

findDirty(Object, Serializable, Object[], Object[], String[], Type[]) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

Called from flush().

findJobInstance(String) - Method in interface org.icenigrid.gridsam.core.JobManager

find a job instance using the job identifier

findJobInstance(String[]) - Method in interface org.icenigrid.gridsam.core.JobManager

find a job instance using the job identifier

findJobInstance(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

find a job instance using the job identifier

findJobInstance(String[]) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

findJobInstancesByState(JobState) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore

find all known JobInstance which has exactly the given state

findJobInstancesByState(JobState) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

find all known JobInstance which has exactly the given state

findJobInstancesWithProperties(Map) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore

find all known JobInstances which satisfy the query string

findJobInstancesWithProperties(Map) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

find all known JobInstances which satisfy the query string

flush() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore

flush all updates to persistent storage

flush() - Method in interface org.icenigrid.gridsam.core.plugin.PersistenceStore

flush all updates to persistent storage

ForkDRMConnector - Class in org.icenigrid.gridsam.core.plugin.connector.fork

MultiStageDRMConnector implementation that performs shell based forking

ForkDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnector

default constructor

ForkDRMConnectorManager - Class in org.icenigrid.gridsam.core.plugin.connector.fork

DRMConnectorBuilder implementation for the shell-based condor integration

ForkDRMConnectorManager() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnectorManager

forkJob(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkStage

fork the job using the attached Shell

ForkStage - Class in org.icenigrid.gridsam.core.plugin.connector.fork

MultiStageDRMConnector.Stage implementation that forks the application locally as defined in the jsdl:Application element.

ForkStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.fork.ForkStage

formalizePath(String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

used when generate original job script

formatXSDDateTimeString(Calendar) - Static method in class org.icenigrid.gridsam.core.util.HPCGSupport

format a date into a XSD dateTime compatible date string using the default time zone

formatXSDDateTimeString(Calendar, TimeZone) - Static method in class org.icenigrid.gridsam.core.util.HPCGSupport

format a date into a XSD dateTime compatible date string using the default time zone

FTP - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

FTP_DELAY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

FTP_PROTOCOL - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

FTP protocol .

FTP_RETRY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

FTPSupport - Class in org.icenigrid.gridsam.core.plugin.transfer.protocol

Purpose:
This is an auxiliary Class of FTPTransferAgent

FTPSupport() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.protocol.FTPSupport

FTPTransferAgent - Class in org.icenigrid.gridsam.core.plugin.transfer.protocol

Purpose:
this Class implements the Interface TransferAgent.

FTPTransferAgent(FileJobInfo) - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.protocol.FTPTransferAgent

Constructor

G

getAction() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the transfer action of the AftJob.

getAction() - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.FileJobMapHelper

get the action from the JobDataMap

getAddTime() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the submit time of the AftJob.

getAftScheduler() - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.RegistryUtil

get Scheduler from Hivemind registry 1.

getApplicationName() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getApplicationVersion() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getAppName() - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

get app name.

getArguments() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getAuthorisation() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

obtain the Authorisation manager instance from the configuration

getBeginTime() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the time when the AftJob begin to be schedulered

getCalendar(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getCalendarNames() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getCallerDN() - Static method in class org.icenigrid.gridsam.core.hostenv.SecurityProviderUtil

get caller's DN.

getCallerDN() - Method in class org.icenigrid.gridsam.core.support.omii.SecurityProviderSupport

getCallerDN() - Method in interface org.icenigrid.gridsam.core.support.SecurityProvider

Get caller's DN.

getCapabilities() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileProvider

Get the filesystem capabilities.
These are the same as on the filesystem, but available before the first filesystem was instanciated.

getCondorEventListeners() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

get the condor event listeners

getCondorLogFile() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

get the condor log file

getCondorRmCommand() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

get the condor_rm command

getCondorSubmitCommand() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage

get the full path of the condor_submit command used by DRMConnector

getConfigClass() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystemConfigBuilder

the config class

getConfigFile() - Method in interface org.icenigrid.gridsam.core.support.ConfigUtilProvider

Get the config file.

getConfigFile() - Method in class org.icenigrid.gridsam.core.support.omii.ConfigUtilSupport

Get the config file name.

getConfigFileName() - Method in class org.icenigrid.gridsam.core.hostenv.ConfigUtil

Get the config file name.

getConfiguration(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

getConfigurationAsMap(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

getConfigUtil() - Static method in class org.icenigrid.gridsam.core.support.AbstractSupportManager

get config-provider instance.
not implemented yet.

getConfigUtil() - Static method in class org.icenigrid.gridsam.core.util.HPCGSupport

getContext() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getCputime() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getCpuTimeLimit() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getCredential(JobContext) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport

get a globus credential from the job context

getCurrentlyExecutingJobs() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getDataSocket() - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.NetFtpClientExtension

get the ftp Socket

getDate() - Method in interface org.icenigrid.gridsam.core.JobStage

get the date when this stage is entered

getDate() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage

get the date when this stage is entered

getDefaultUserDN() - Static method in class org.icenigrid.gridsam.core.hostenv.UserMappingUtil

Get the userDN of the default user.

getDefaultUserMapInfo() - Static method in class org.icenigrid.gridsam.core.hostenv.UserMappingUtil

Get the user mapping of the default users.

getDelay(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

getDescription() - Method in interface org.icenigrid.gridsam.core.JobStage

get the description associated with this stage

getDescription() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage

get the description associated with this stage

getDescription() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getDestURL() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the transfer file's destination URL

getDestURL() - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.FileJobMapHelper

get the destURL from the JobDataMap

getDouble(String, String, double) - Method in class org.icenigrid.gridsam.core.util.XMLConfigReader

Call getString method to get a double value.

getDrmaaSession() - Static method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnectorManager

get the singleton Drmaa Session

getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

return a DRMConnector instance based on the configuration

getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnectorManager

return a DRMConnector instance based on the configuration

getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnectorManager

return a DRMConnector instance based on the configuration

getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnectorManager

return a DRMConnector instance based on the configuration

getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSDRMConnectorManager

getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnectorManager

return a DRMConnector instance based on the configuration

getDRMConnector() - Method in interface org.icenigrid.gridsam.core.plugin.DRMConnectorManager

return a DRMConnector instance based on the configuration

getDRMConnector(String) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext

get the named DRMConnector from the context

getDRMConnector(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

get the named DRMConnector from the context

getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.manager.DelegatingDRMConnectorManager

return a DRMConnector instance based on the configuration

getDRMConnector() - Method in class org.icenigrid.gridsam.core.plugin.manager.LegacyDRMConnectorManager

return a DRMConnector instance based on the configuration

getDRMConnectorBuilder() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

obtain the DRMConnectorBuilder instance from the configuration

getElementBody(Document, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

get element body using name from document d.

getEndTime() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the time when then AftJob is completed

getEntity(String, Serializable) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

Get a fully loaded entity instance that is cached externally

getEntityName(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

Get the entity name for a persistent or transient instance

getEnvironment() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getErrinfo() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getError() - Method in class org.icenigrid.gridsam.core.plugin.shell.AccumulatedCommandListener

get the accumulated error output

getError() - Method in class org.icenigrid.gridsam.core.util.FileDriverResponseParser

getError() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getErrorInfo() - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

get error info in jsdl.

getErrorStream() - Method in class org.icenigrid.gridsam.core.plugin.shell.PipedCommandListener

get an InputStream to read data written to the standard error

getEventCodes() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventAdapter

get the set event codes interested by this event listener

getEventCodes() - Method in interface org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventListener

get the set event codes interested by this event listener

getExecutable() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getFileClient() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystem

get File Client

getFileJobInfo(String) - Method in class org.icenigrid.gridsam.core.hostenv.FileProviderUtil

get a file job info

getFileJobInfo() - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.TransferAgentFactory

getFileJobInfo(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.AbstractFileProviderSupport

get FileJob's info from database by JobName.

getFileJobInfo(String) - Method in interface org.icenigrid.gridsam.core.support.FileProvider

Get file job info

getFileJobInfoByJobName(String) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

get AftJob by jobName

getFileJobInfoByJobName(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

getFileJobInfoByStatus(String) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

get AftJob by the status

getFileJobInfoByStatus(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

getFileJobInfoInstance(String, Object[]) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

Query function: query all qualified AftJobInfo Records

getFileJobInfoInstance(String) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

Query function: excute a sql command to deal with qualified AftJobInfo Records.

getFileJobInfoInstance(String, Object[]) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

Query function: query all qualified AftJobInfo Records

getFileJobInfoInstance(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

Query function: excute a sql command to deal with qualified AftJobInfo Records.

getFileJobInstanceStore() - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.RegistryUtil

get FileJobInstanceStore from Hivemind registry 1.

getFileJobStatus(String) - Method in class org.icenigrid.gridsam.core.hostenv.FileProviderUtil

get status of file-transfer job.

getFileMonitoringPeriod() - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

getFileObject(String, MyProxyInfo) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.AbstractTransferAgent

Provide a default method to resolve url to FileObject

getFileObject(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.AbstractTransferAgent

Provide a default method to resolve url to FileObject

getFileProvider() - Static method in class org.icenigrid.gridsam.core.support.AbstractSupportManager

get file provider instance.

getFileProviderType() - Method in class org.icenigrid.gridsam.core.hostenv.FileProviderUtil

get the file provider type, which is defined in the FileProvider

getFileProviderType() - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.AFTFileProviderSupport

get the file provider

getFileProviderType() - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.SFTFileProviderSupport

get the file provider type

getFileProviderType() - Method in interface org.icenigrid.gridsam.core.support.FileProvider

getFileResource() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystem

get File Resource

getFileSizeString(long) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.AbstractTransferAgent

Parse the long file size to String.

getFileSystem(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.AlwaysFailFileSystemProvider

get the file system associated with the job

getFileSystem(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DefaultFileSystemProvider

get the file system associated with the job

getFileSystem(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DelegatingFileSystemProvider

get the file system associated with the job

getFileSystem(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ShellBasedFileSystemProvider

get the file system associated with the job

getFileSystem(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSFileSystemProvider

get the file system associated with the job.

getFileSystem(JobContext) - Method in interface org.icenigrid.gridsam.core.plugin.FileSystemProvider

get the file system associated with the job

getFileSystem() - Method in interface org.icenigrid.gridsam.core.plugin.JobContext

get the file system associated with the job context

getFileSystem() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

get the file system associated with the job

getFileSystem() - Method in class org.icenigrid.gridsam.core.plugin.shell.local.LocalShell

get the root of the filesystem presented by this shell

getFileSystem() - Method in interface org.icenigrid.gridsam.core.plugin.shell.Shell

get the root of the filesystem presented by this shell

getFileSystem() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell

get the root of the filesystem presented by this shell

getFileSystemManager() - Static method in class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport

get the FileSystemManager singleton

getFileSystemOptions(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DefaultFileSystemProvider

get the file system options for the job.

getFileSystemOptions() - Method in class org.icenigrid.gridsam.integration.common.AbstractJobManagerTestCase

get the file system options

getFirstExistPath(String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To get the first exist path of the given dirPath.

getGlobalJobListeners() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getGlobalTriggerListeners() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getGlobalUserDN(JobContext) - Static method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStageUtil

get the grid user DN to execute the job.

getGlobalUserDN(String) - Method in class org.icenigrid.gridsam.core.support.omii.UserMapperSupport

get global user's DN according to localUserName.

getGlobalUserDN(String) - Method in interface org.icenigrid.gridsam.core.support.UserMapper

Get global user info through local user and cluster.

getGroovyScriptEngine() - Static method in class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector

get the shared GroovyScriptEngine

getGroupName() - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.LocalFileAgent.LocalUser

getGSIFTPFileSystem() - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject

get the GSIFTPFileSystem this file is associated with

getGSSCredential(FileSystemOptions) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystemConfigBuilder

get the access credential

getHost() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

getHPCG_UN() - Static method in class org.icenigrid.gridsam.core.util.HPCGSupport

Get the HPCG UserName from the SOAP request context.

getID() - Method in interface org.icenigrid.gridsam.core.JobInstance

the job identifier

getID() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

the job identifier

getIndividualCPUCount() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getInput() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getInstance() - Static method in class org.icenigrid.gridsam.core.plugin.shell.DefaultCommandListener

get the singleton instance

getInstance() - Static method in class org.icenigrid.gridsam.core.plugin.shell.NullCommandListener

get the singleton instance

getInstance() - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.TransferAgentFactory

get TransferAgent to transfer file.

getInstance() - Static method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileNameParser

getInstance() - Static method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystemConfigBuilder

get the singleton instance

getInt(String, String, int) - Method in class org.icenigrid.gridsam.core.util.XMLConfigReader

Call getString method to get an int value.

getJobDefinition() - Method in interface org.icenigrid.gridsam.core.JobInstance

get the Job description document as a string

getJobDefinition() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

get the Job description document as a string

getJobDescriptionDocument(InputSource) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

To Load the JSDL file into the xml docement object via inputsource.

getJobDetail(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getJobGroupNames() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getJobID() - Method in class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor

get the job id this DRMConnector is schedule to perform on

getJobid() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getJobInstance() - Method in interface org.icenigrid.gridsam.core.plugin.JobContext

the job instance associated with this job context

getJobInstance(String) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore

create or retrieve a job instance with the given ID

getJobInstance() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

the job instance to be launched through the DRMConnector

getJobInstance(String) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

create or retrieve a job instance with the given ID

getJobInstanceStore() - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext

get the job instance store

getJobInstanceStore() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

obtain the JobInstanceStore instance from the configuration

getJobInstanceStore() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

get the job instance store

getJobListener(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getJobListenerNames() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getJobManager() - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMSubmissionStage

getJobManager() - Method in class org.icenigrid.gridsam.integration.common.AbstractJobManagerTestCase

get the job manager for this test

getJobManagerContext() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.AbstractDRMConnectorManager

get the job manager context associated with this DRMConnectorManager

getJobName() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the jobName of the AftJob

getJobName() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getJobNames(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getJobProject() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getJobStages() - Method in interface org.icenigrid.gridsam.core.JobInstance

get the job status history associated with this job instance

getJobStages() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

get the job status history associated with this job instance

getJobStatus(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.AbstractFileProviderSupport

search FileJob's status.

getJobStatus(String) - Method in interface org.icenigrid.gridsam.core.support.FileProvider

Get status of a job.

getJobWorkingDir(JobContext) - Static method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStageUtil

get private job work directory from jobcontext.

getJSDLString(String) - Method in class org.icenigrid.gridsam.integration.common.AbstractJobManagerTestCase

get the test case JSDL document

getKey(String, String) - Method in class org.icenigrid.gridsam.core.util.XMLConfigReader

Get the key for the selected subkey and value.

getKeyfile() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PublicKeyAuthenticationConfig

getKeys() - Method in class org.icenigrid.gridsam.core.util.XMLConfigReader

Define getKeys method.

getLastKnownStage() - Method in interface org.icenigrid.gridsam.core.JobInstance

get the last known job stage

getLastKnownStage() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

get the last known job stage

getLengthOfIDsInBytes() - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.HashFunction

Returns the length of IDs generated by this hash function.

getLocale() - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

getLocalHomePath(String) - Static method in class org.icenigrid.gridsam.core.hostenv.UserMappingUtil

To get the correponding home location for the UserDN on the indicated cluster.

getLocalSecurityMode() - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

getLocalUN(String) - Static method in class org.icenigrid.gridsam.core.hostenv.UserMappingUtil

Get the local UserName using the corresponding Global UserMap

getLocalUN(String) - Static method in class org.icenigrid.gridsam.core.util.HPCGSupport

Get the corresponding local username by invoking the usermap function.

getLocalUser() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the localUser The localUser including user-name and group-name

getLocalUserDN(JobContext) - Static method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStageUtil

get local user name to execute the job.

getLocalUserGroup(String) - Static method in class org.icenigrid.gridsam.core.hostenv.UserMappingUtil

To get local user's group for the UserDN on the indicated cluster.

getLocalUserGroup(JobContext) - Static method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStageUtil

getLocalUserInfo(String) - Method in class org.icenigrid.gridsam.core.support.omii.UserMapperSupport

get local user's info.

getLocalUserInfo(String) - Method in interface org.icenigrid.gridsam.core.support.UserMapper

Get local user info of the current global user.

getLog() - Method in interface org.icenigrid.gridsam.core.plugin.JobContext

get a Log associated with this job.

getLog() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

get a Logger associated with this job

getMatcher(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.NamePattern

set the name

getMaximumRetryCount() - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMStatusStage

get the retry count

getMaximumRetryCount() - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStatusStage

get the retry count.

getMaxRetryCount() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the maxRetryCout

getMBeanName() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

create an MBean ObjectName for this object

getMem() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getMetaData() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getMilliSecondString(long) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.DateTypeConvert

Format a long time to a String, support millisecond.

getModuleMessages(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

getMonitoringPeriod() - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnector

get the wait between monitoring cycle

getMonitoringPeriod() - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnector

get the wait between monitoring cycle.

getMonitoringPeriod() - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnector

get the wait between monitoring cycle

getMonitoringPeriod() - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSDRMConnector

get the wait between monitoring cycle.

getMonitoringPeriod() - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnector

get the wait between monitoring cycle

getMyProxyInfo() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

getMyProxyInfoFromString(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

getName() - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.Group

set the name

getName() - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.NamedGroupRule

set the name

getName() - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

get job name.

getNcpus() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getNodeList() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getNodes() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getNumberOfItems() - Method in class org.icenigrid.gridsam.core.util.XMLConfigReader

Returns the number of items.

getOriginalLength() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

getOtherInfo() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the otherInfo

getOtherInfo() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getOutinfo() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getOutput() - Method in class org.icenigrid.gridsam.core.plugin.shell.AccumulatedCommandListener

get the accumulated standard output

getOutput() - Method in class org.icenigrid.gridsam.core.util.FileDriverResponseParser

getOutput() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getOutputStream() - Method in class org.icenigrid.gridsam.core.plugin.shell.PipedCommandListener

get an InputStream to read data written to the standard output

getPassphrase() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PublicKeyAuthenticationConfig

getPassword() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PasswordAuthenticationConfig

getPasswordAuthentication() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

getPattern() - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.NamePattern

set the name

getPausedTriggerGroups() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getPBSJobStatusCommand() - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.PBSStatusStage

get the PBS Job Status command

getPBSJobStatusCommand() - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnectorManager

get the PBS Job Status command

getPBSNamedQueue() - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSSubmitStage

getPBSRmCommand() - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnectorManager

get the PBS_rm command

getPBSSubmitCommand() - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSSubmitStage

get the full path of the PBS qsub command used by DRMConnector

getPBSTailCommand() - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnectorManager

get the PBS log file

getPlatformMBeanServer() - Static method in class org.icenigrid.gridsam.core.jmx.JMXSupport

get the platform MBean server

getPort() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

getPosixShellPath() - Method in class org.icenigrid.gridsam.core.plugin.shell.POSIXShell

get the path to the posix shell executable

getPossibleNextState() - Method in class org.icenigrid.gridsam.core.JobState

get a list of JobState this state can advance to

getPostProcessContent() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getPreference() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.InlineProperties

the preference ranking associated with the properties.

getPreProcessContent() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getProperties() - Method in interface org.icenigrid.gridsam.core.JobInstance

get the properties associated with the job

getProperties() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector

get properties

getProperties() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

get the properties associated with the job

getProperty(String, String) - Method in class org.icenigrid.gridsam.core.hostenv.ConfigUtil

Get a property value of the default item.

getProperty(String, String, String) - Method in class org.icenigrid.gridsam.core.hostenv.ConfigUtil

Get the property value of a specific item.

getProperty(String, String) - Method in interface org.icenigrid.gridsam.core.support.ConfigUtilProvider

Get a property value of the default item.

getProperty(String, String, String) - Method in interface org.icenigrid.gridsam.core.support.ConfigUtilProvider

Get the property value of a specific item.

getProperty(String, String) - Method in class org.icenigrid.gridsam.core.support.omii.ConfigUtilSupport

read xml config file and get property.

getProperty(String, String, String) - Method in class org.icenigrid.gridsam.core.support.omii.ConfigUtilSupport

Get the property value of a specific item.

getProtocol() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the transfer protocol which AftJob is used

getProtocol() - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.FileJobMapHelper

get the protocol from the JobDataMap

getProvider() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DelegatingFileSystemProvider

get the delegate

getProxyLifetime() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

getProxyPassphrase() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

getProxyServerDN() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

getProxyServerHost() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

getProxyServerPort() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

getProxyUsername() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

getPublicKeyAuthentication() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

getPureName(String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

get the pure name , pure name means the name without path information.

getQueriedJobs() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

get the number of job status queries within the job manager uptime

getQueriedJobs() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean

get the number of job status queries within the job manager uptime

getQueue() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getRegistry() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

get the mutable object registry associated with this job manager

getRegistry() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

get the object registry to locate configured components of the GridSAM system

getRegistry() - Static method in class org.icenigrid.gridsam.core.plugin.manager.InitRegistry

Get the Registry using the default configuration resources.

getRegistry(String[]) - Static method in class org.icenigrid.gridsam.core.plugin.manager.InitRegistry

Get the Registry using the give configuration resources.

getRegistry() - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

get the registry managed by this registry

getReservedField() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

getResponseInfo() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the responseInfo of the AftJob

getRetryCount() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the retryCount of the AftJob

getRetryInterval() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the retryInterval of the AftJob

getRetryTimes(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

getRidOfDotAndDoubleDot(FTPFile[]) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.FTPSupport

get rid of "." and "..".

getRootFileSystemURI() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DefaultFileSystemProvider

get the root file system URI

getScheduler() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

obtain the Scheduler instance from the configuration

getSchedulerInstanceId() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getSchedulerListeners() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getSchedulerName() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getScreenErrFilePath() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getScreenOutFilePath() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getScript() - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

get script(executable).

getScriptResource() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector

get script location

getSecurityProvider() - Static method in class org.icenigrid.gridsam.core.support.AbstractSupportManager

get security provider instance.

getService(String, Class) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

getService(Class) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

getServiceIds(Class) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

getServiceInvoker() - Static method in class org.icenigrid.gridsam.core.support.AbstractSupportManager

get service invoker instance.

getSession() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore

retrieve a hibernate session for the current thread

getShell() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

get the shell to use to for launching job

getShell() - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.AbstractShellStage

get the shell to use to for launching job

getShell() - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ShellBasedFileSystemProvider

get the associated shell

getShell() - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnectorManager

get the shell to use to for launching job

getSiteInfo() - Static method in class org.icenigrid.gridsam.core.hostenv.SecurityProviderUtil

get information of the site.

getSiteInfo() - Method in class org.icenigrid.gridsam.core.support.omii.SecurityProviderSupport

getSiteInfo() - Method in interface org.icenigrid.gridsam.core.support.SecurityProvider

Get basic info of the site.

getSourceURL() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the transfer file's source URL

getSourceURL() - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.FileJobMapHelper

get the sourceURL from the JobDataMap

getSpoolDirectory() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemInitStage

get the spooling directory

getSpoolDirectory() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.TempFileSystemInitStage

Get the spooling directory.

getSpoolDirectory() - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.FileSystemInitStage

get the spooling directory

getStageIn() - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

get stage in file list.

getStageInList() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getStageOut() - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

get stage out file.

getStageOutList() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getState() - Method in interface org.icenigrid.gridsam.core.JobStage

get the state

getState() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage

get the state

getStatistics() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore

get statistics

getStatisticsLog() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

get a log for outputting job specific statistics

getStatus() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the status of the AftJob

getStatus() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getStderr() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getStdout() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getString(String, String, String) - Method in class org.icenigrid.gridsam.core.util.XMLConfigReader

Overloading of getString method with additional subkey and default parameter.

getString(String, String) - Method in class org.icenigrid.gridsam.core.util.XMLConfigReader

Overloading of getString method with additional subkey.

getSubmittedJobs() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

get the number of submitted jobs within the job manager uptime

getSubmittedJobs() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean

get the number of submitted jobs within the job manager uptime

getTailCommand() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

get the condor log file

getTargetQueue() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getTmpStagingDir(JobContext) - Static method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStageUtil

get tmp staging directory from job properties.

getTotalDiskSpace() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getTotalLength() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the totalLength of the file which AftJob transfers

getTotalPhysicalMemory() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getTotalResourceCount() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getTotalVirtualMemory() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getTransferredLength() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the transferredLength of the file which AftJob transfers

getTrigger(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getTriggerGroupNames() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getTriggerListener(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getTriggerListenerNames() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getTriggerNames(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getTriggersOfJob(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getTriggerState(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

getUpTime() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

get the uptime of the JobManager

getUpTime() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean

get the uptime of the JobManager

getUser() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

getUserDN() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

get the userDN

getUserMapInfo(String) - Static method in class org.icenigrid.gridsam.core.hostenv.UserMappingUtil

getUserMapper() - Static method in class org.icenigrid.gridsam.core.support.AbstractSupportManager

get user mapper.

getUserName() - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.LocalFileAgent.LocalUser

getUserName() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getVersion() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage

get version

getVersion() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

get version

getVersion() - Static method in class org.icenigrid.gridsam.core.Version

get the version string

getVmem() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getWalltime() - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

getWallTimeLimit() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getWorkingDirectory() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getXJSDL() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

getXJSDL() - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

get jsdl document.

getXpath() - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.XPathRule

get the xpath expression

GLOBAL_USERDN - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

GlobusCredentialSupport - Class in org.icenigrid.gridsam.core.plugin.connector.globus

Globus credential support class (e.g.

GlobusCredentialSupport() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport

GlobusDRMConnector - Class in org.icenigrid.gridsam.core.plugin.connector.globus

MultiStageDRMConnector implementation that provides GRAM submission functionality

GlobusDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnector

create a MultiStageDRMConnector

GlobusDRMConnectorManager - Class in org.icenigrid.gridsam.core.plugin.connector.globus

DRMConnectorManager implementation for GT2.4.3 integration

GlobusDRMConnectorManager() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnectorManager

GlobusInitStage - Class in org.icenigrid.gridsam.core.plugin.connector.globus

DRMConnector Stage that initialise the globus environment for staging and submission

GlobusInitStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusInitStage

GRAMStatusStage - Class in org.icenigrid.gridsam.core.plugin.connector.globus

A DRMConnector for retrieving the job status from the globus gatekeeper

GRAMStatusStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMStatusStage

GRAMSubmissionStage - Class in org.icenigrid.gridsam.core.plugin.connector.globus

DRMConnector implementation that submit the application to a GRAM job manager

To submit a job to a Globus resource, you need to have - a valid X509 proxy Not all the JSDL tags are dealt with when submitting a job to a Globus resource.

GRAMSubmissionStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMSubmissionStage

GRAMTerminateStage - Class in org.icenigrid.gridsam.core.plugin.connector.globus

DRMConnector for terminating a GRAM job

GRAMTerminateStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMTerminateStage

GRID_MAP - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

GRIDSAM_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

the GridSAM namespace string

GridSAMSupport - Class in org.icenigrid.gridsam.core.support

Support class for GridSAM web service

GridSAMSupport() - Constructor for class org.icenigrid.gridsam.core.support.GridSAMSupport

GroovyDRMConnector - Class in org.icenigrid.gridsam.core.plugin.connector.common

A DRMConnector that uses a groovy script to perform submission

GroovyDRMConnector(List) - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector

Constructor allowing a set of properties to be passed to the groovy script as implicit variables

GroovyDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector

Default constructor

Group - Class in org.icenigrid.gridsam.core.plugin.manager.auth.simple

Group() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.auth.simple.Group

GROUP_TRANSFER - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

the AftJob's groupName .

Groups - Class in org.icenigrid.gridsam.core.plugin.manager.auth.simple

Groups() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.auth.simple.Groups

GSIFTP - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

GSIFTP_DELAY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

GSIFTP_PROTOCOL - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

GSIFTP protocol .

GSIFTP_RETRY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

GSIFTPFileNameParser - Class in org.icenigrid.gridsam.core.plugin.vfs.gsiftp

GSIFTPFileNameParser() - Constructor for class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileNameParser

GSIFTPFileObject - Class in org.icenigrid.gridsam.core.plugin.vfs.gsiftp

Class representing a GSIFTP file

GSIFTPFileObject(FileName, GSIFTPFileSystem, FileName) - Constructor for class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject

create a GSIFTP file object

GSIFTPFileProvider - Class in org.icenigrid.gridsam.core.plugin.vfs.gsiftp

Ths VFS provider class for Grid FTP

GSIFTPFileProvider() - Constructor for class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileProvider

default constructor

GSIFTPFileSystem - Class in org.icenigrid.gridsam.core.plugin.vfs.gsiftp

A GSIFTP file system

GSIFTPFileSystem(FileName, FileSystemOptions) - Constructor for class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystem

default constructor

GSIFTPFileSystemConfigBuilder - Class in org.icenigrid.gridsam.core.plugin.vfs.gsiftp

GSIFTPFileSystem configurer

H

handleGetObject(String) - Method in class org.icenigrid.gridsam.core.util.XMLConfigReader

handleGetObject implementation.

hashCode() - Method in class org.icenigrid.gridsam.core.JobState

get the hashcode of this object

hashCode() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressInstruction

get hashcode value

hashCode() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage

Returns a hash code value for the object.

hashCode() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

Returns a hash code value for the object.

hashCode(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum

hashcontents - Variable in class org.icenigrid.gridsam.core.util.XMLConfigReader

The hastable that will contain data loaded from XML.

HashFunction - Class in org.icenigrid.gridsam.core.plugin.transfer.util

Purpose:
This Class is used to generate the unique jobName of the different AftJob

hasShell() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

test if a shell has been associated with this stage

hasShell() - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.AbstractShellStage

test if a shell has been associated with this stage

hasShell() - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnectorManager

test if a shell has been associated with this stage

HibernateFileJobInstanceStore - Class in org.icenigrid.gridsam.core.plugin.transfer.persistence

Purpose:
hibernate persistence class

HibernateFileJobInstanceStore(String) - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

create a new HibernatePersistenceStore with a transient database

HibernateFileJobInstanceStore(List) - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

create a HibernatePersistenceStore with a list of InlineProperties that is aggregated to become a single Properties.

HibernateFileJobInstanceStore(Properties) - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

create a new HibernatePersistenceStore

HibernateFileJobInstanceStore(Configuration) - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

create a new HibernatePersistenceStore

HibernateJobInstanceStore - Class in org.icenigrid.gridsam.core.plugin.persistence.hibernate

JobInstanceStore implementation that uses Hibernate to persist java objects

HibernateJobInstanceStore(String) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

create a new HibernatePersistenceStore with a transient database

HibernateJobInstanceStore(List) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

create a HibernatePersistenceStore with a list of InlineProperties that is aggregated to become a single Properties.

HibernateJobInstanceStore(Properties) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

create a new HibernatePersistenceStore

HibernateJobInstanceStore(Configuration) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

create a new HibernatePersistenceStore

HibernateJobStateEnum - Class in org.icenigrid.gridsam.core.plugin.persistence.hibernate

Hibernate type mapper for JobState class

HibernateJobStateEnum() - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum

HibernatePersistenceStore - Class in org.icenigrid.gridsam.core.plugin.persistence.hibernate

PersistenceStore implementation that uses Hibernate to persist java objects

HibernatePersistenceStore(String) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore

create a new HibernatePersistenceStore with a transient database

HibernatePersistenceStore(List) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore

create a HibernatePersistenceStore with a list of InlineProperties that is aggregated to become a single Properties.

HibernatePersistenceStore(Properties) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore

create a new HibernatePersistenceStore

HibernatePersistenceStore(Configuration) - Constructor for class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore

create a new HibernatePersistenceStore

HPCG_JOB_ID_PREFIX - Static variable in class org.icenigrid.gridsam.core.util.HPCGSupport

The prefix of Job ID for HPCG Job.

HPCG_NAMESPACE - Static variable in class org.icenigrid.gridsam.core.util.HPCGSupport

the GridSAM namespace as a org.dom4j.Namespace object

HPCG_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.util.HPCGSupport

HPCG Namespace String.

HPCG_UN - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

HPCGJobPropertyConstants - Class in org.icenigrid.gridsam.core.util

Purpose:
To provide constants of job property names.

HPCGJobPropertyConstants() - Constructor for class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

HPCGSupport - Class in org.icenigrid.gridsam.core.util

Support class for HPCG Service

HPCGSupport() - Constructor for class org.icenigrid.gridsam.core.util.HPCGSupport

HTTP - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

HTTP_DELAY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

HTTP_PROTOCOL - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

HTTP protocol .

HTTP_RETRY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

HTTPS - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

HTTPS_DELAY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

HTTPS_RETRY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

HTTPTransferAgent - Class in org.icenigrid.gridsam.core.plugin.transfer.protocol

Purpose:
this Class implements the Interface TransferAgent.

HTTPTransferAgent(FileJobInfo, FileObject, FileObject) - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.protocol.HTTPTransferAgent

I

inGroup(Subject) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.Group

test whether the subject is in the group

initialise(JobManagerContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.AbstractDRMConnectorManager

called by the Job Manager to initialise this DRMConnectorBuilder

initialise(JobManagerContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

called by the Job Manager to initialise this DRMConnectorBuilder

initialise(JobManagerContext) - Method in interface org.icenigrid.gridsam.core.plugin.DRMConnectorManager

called by the Job Manager to initialise this DRMConnectorBuilder

initialise(Registry) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

reinitialise the machinery

initialise(JobManagerContext) - Method in class org.icenigrid.gridsam.core.plugin.manager.DelegatingDRMConnectorManager

called by the Job Manager to initialise this DRMConnectorBuilder

initialise(JobManagerContext) - Method in class org.icenigrid.gridsam.core.plugin.manager.LegacyDRMConnectorManager

called by the Job Manager to initialise this DRMConnectorBuilder

initialise(Scheduler) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

initialise the Scheduler with the delegatee

InitRegistry - Class in org.icenigrid.gridsam.core.plugin.manager

Use single pattern to create Registry instance.
To make the whole gridsam has only one place to init the Registry.

InlineProperties - Class in org.icenigrid.gridsam.core.plugin.connector.common

Extension of Properties that allows a string that follows the properties file format to be added to the Properties object.

InlineProperties() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.InlineProperties

instantiate(String, EntityMode, Serializable) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

Instantiate the entity class.

instantiate(String, Serializable) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

Instantiate the entity class.

interrupt() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext.StageTask

Called by the Scheduler when a user interrupts the Job.

interrupt(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

interrupt() - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.AFTFileTransferJob

interrupt the asynchronous file job

interrupt() - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.SFTFileTransferJob

interrupt the FileJob

INTERRUPT_FILEJOB_FAULT - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

String .

invoke(String, String, Object[], boolean) - Method in interface org.icenigrid.gridsam.core.support.ServiceInvoker

invoke service.

isAppend() - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

isCompletely(FileJobInfo) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.AbstractTransferAgent

Provide a default judge method to check the file transfer process

isCompletely(FileJobInfo) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.LocalFileAgent

do not check whether the file has been

isCompletely(FileJobInfo) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.protocol.TransferAgent

check wheter the transfer is completely

isConfigurationMappable(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

isCopyToSpool() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage

should the binary be copy to the condor spool directory if the executable is staged in

isCopyToSpool() - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSSubmitStage

should the binary be copy to the PBS spool directory if the executable is staged in

isEnableSecurity() - Static method in class org.icenigrid.gridsam.core.util.SecurityConfigUtil

isInStage(JobState) - Method in interface org.icenigrid.gridsam.core.JobInstance

test whether the job is currently in the given state

isInStage(JobState) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

test whether the job is currently in the given state

isInterrupted() - Method in interface org.icenigrid.gridsam.core.plugin.JobContext

test whether this context has been interrupted

isInterrupted() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

test whether this context has been interrupted

isMutable() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum

Are objects of this type mutable?

isNeedExecution(JobInstance) - Static method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

Whether this job need execution? Only the job whose last state is before the executed state is possible need execution.

isNeedStageIn(JobInstance) - Static method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

Whether this job need stage in? Only the job whose last state is before the staged-in state is possible need a stage-in.

isNeedStageout(JobInstance) - Static method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

Whether this job need stage out? Only the job whose last state is before the staged-out state is possible need stage out.

isObjEqual(Object, Object) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.util.HashFunction

Whether the two object is equal?

isPaused() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

isReadAble(String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

check owner can read filePath or not.

isRecovering() - Method in interface org.icenigrid.gridsam.core.plugin.JobContext

test whether this context is recovering from a crash

isRecovering() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

test whether this context is recovering from a crash

isShutdown() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

isSuccess() - Method in class org.icenigrid.gridsam.core.util.FileDriverResponseParser

isSuspended() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

flag to indicate whether the JobManager is suspended

isSuspended() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean

flag to indicate whether the JobManager is suspended

isTerminal() - Method in class org.icenigrid.gridsam.core.JobState

test whether this state is a terminal state

isTransient(Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

Called to distinguish between transient and detached entities.

isWriteAble(String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

check owner can write in filePath or not.

J

JMXSupport - Class in org.icenigrid.gridsam.core.jmx

Created by IntelliJ IDEA.

JMXSupport() - Constructor for class org.icenigrid.gridsam.core.jmx.JMXSupport

JOB_HOME_DIR - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

JOB_NAME - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

JOB_STATUS - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

JOB_TRANSFER - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

JobContext - Interface in org.icenigrid.gridsam.core.plugin

Interface defining a context object being passed through the launching pipeline providing useful information about the job and the environment to be launched.

JobContext.ThrowableRunnable - Interface in org.icenigrid.gridsam.core.plugin

A runnable-like interface that allows exception to be caught

JobIdentificationStage - Class in org.icenigrid.gridsam.core.plugin.connector.common

DRMConnector for inserting the JSDL JobIdentification data into the job instance as properties

JobIdentificationStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.JobIdentificationStage

JobInstance - Interface in org.icenigrid.gridsam.core

Interface representing a job instance in the GridSAM JobManager API

JobInstanceChangeListener - Interface in org.icenigrid.gridsam.core

Listener interface to receive job change event

JobInstanceStore - Interface in org.icenigrid.gridsam.core.plugin

Manager interface of JobInstance storage.

JobManager - Interface in org.icenigrid.gridsam.core

Interface representing the entry-point to the GridSAM job submission and monitoring system.

JOBMANAGER_CONFIG_RESOURCE - Static variable in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

default resource containing the job manager configuration

JobManagerBuilder - Interface in org.icenigrid.gridsam.core

Builder interface for JobManager

JobManagerContext - Interface in org.icenigrid.gridsam.core.plugin

Context interface for DRMConnector to take advantage of services provided by the JobManager

JobManagerException - Exception in org.icenigrid.gridsam.core

Exception thrown when there is a general error with the job manager configuration

JobManagerException() - Constructor for exception org.icenigrid.gridsam.core.JobManagerException

Constructs a new exception with null as its detail message.

JobManagerException(String) - Constructor for exception org.icenigrid.gridsam.core.JobManagerException

Constructs a new exception with the specified detail message.

JobManagerException(String, Throwable) - Constructor for exception org.icenigrid.gridsam.core.JobManagerException

Constructs a new exception with the specified detail message and cause.

JobManagerException(Throwable) - Constructor for exception org.icenigrid.gridsam.core.JobManagerException

Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).

JobManagerMBean - Interface in org.icenigrid.gridsam.core.plugin.manager

MBean interface for all JobManager derivation

JOBNAME_IN_DATABASE - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

jobname field name in database .

JobStage - Interface in org.icenigrid.gridsam.core

Interface representing a stage of a submitted job

JobStageComparator - Class in org.icenigrid.gridsam.core

User: wwhl Date: 15-Sep-2004 Time: 11:07:22

JobStageComparator() - Constructor for class org.icenigrid.gridsam.core.JobStageComparator

JobState - Class in org.icenigrid.gridsam.core

Enumeration class representing Job States

JSDL - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

JSDL_HPCP_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

JSDL_MPI_SCHEMA_RESOURCE - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

resource location to locate the myproxy schema

JSDL_MYPROXY_SCHEMA_RESOURCE - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

resource location to locate the myproxy schema

JSDL_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

the JSDL namespace string

JSDL_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.util.HPCGSupport

the JSDL namespace string

JSDL_POSIX_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

the JSDL POSIX namespace string

JSDL_POSIX_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.util.HPCGSupport

the JSDL POSIX namespace string

JSDL_POSIX_SCHEMA_RESOURCE - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

resource location to locate the posix schema

JSDL_SCHEMA_RESOURCE - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

resource location to locate the JSDL schema

JSDLCreator - Class in org.icenigrid.gridsam.core.util

Purpose: This Class is the Utility Class used by HPCG Project.

JSDLCreator() - Constructor for class org.icenigrid.gridsam.core.util.JSDLCreator

Constructor.

JSDLCreator(Document) - Constructor for class org.icenigrid.gridsam.core.util.JSDLCreator

Constructor with the parameter of JSDL Document.

JSDLCreator(String) - Constructor for class org.icenigrid.gridsam.core.util.JSDLCreator

Constructor with the parameter of JSDL content String.

JSDLSupport - Class in org.icenigrid.gridsam.core.jsdl

Support class for handling JSDL document support added for specifying MyProxy Attribs in jsdl document.

JSDLSupport() - Constructor for class org.icenigrid.gridsam.core.jsdl.JSDLSupport

L

LATEST_STATE - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

LegacyDRMConnectorManager - Class in org.icenigrid.gridsam.core.plugin.manager

DRMConnectorBuilder implementation to provide backward compatibility of DRMConnector configuration that makes use of the "gridsam.DRMConnector" name to obtain DRMConnector instance

LegacyDRMConnectorManager(String) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.LegacyDRMConnectorManager

create a LegacyDRMConnectorBuilder with the given name as the name to lookup DRMConnector instance

listZipEntry(String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

handle zip file.

loadCredential(JobContext) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport

load the MyProxy credential as detailed in the JSDL document

loadCredential(MyProxyInfo) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport

load the MyProxy credential, the myproxy info is given in MyProxyInfo

loadCredential(String, String, String) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport

load the MyProxy credential as detailed in the JSDL document

loadCredential(String, int, String, String) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport

load the MyProxy credential as detailed in the JSDL document

loadCredential(String, int, String, String, String, int) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport

load the MyProxy credential as detailed in the JSDL document

loadFromDom4jDocument(Document) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

To load JSDL from Dom4j Document.

loadFromFile(File) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

To load JSDL from xJSDL File.

loadFromSource(InputSource) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

Load JSDL content from InputSource into JSDLUtility.

loadFromString(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

To load JSDL from String content.

loadFromW3CDocument(Document) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

To load JSDL from w3c Document.

loadJSDLContent() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

TO Load JSDL from this.xJSDL into the variables in JSDLUtility Object.

loadMyProxyInfo(JobContext) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport

load the MyProxyInfo as detailed in the JSDL document

LOCA_FILE_PATH - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

LOCAL - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

LOCAL_DELAY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

LOCAL_FILE_PROTOCOL - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

local protocol .

LOCAL_JOB_ID - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

LOCAL_RETRY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

LOCAL_SECURITY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

LOCAL_UN - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

LOCAL_USER_GROUP - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

LOCAL_USER_GROUP - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

LOCAL_USER_NAME - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

LOCAL_USER_SEP - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

LOCAL_USER_SEP - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

LocalFileAgent - Class in org.icenigrid.gridsam.core.plugin.transfer.protocol

Purpose:
this Class implements the Interface TransferAgent.

LocalFileAgent(FileJobInfo) - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.protocol.LocalFileAgent

LocalFileAgent.LocalUser - Class in org.icenigrid.gridsam.core.plugin.transfer.protocol

LocalFileAgent.LocalUser(String) - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.protocol.LocalFileAgent.LocalUser

LocalShell - Class in org.icenigrid.gridsam.core.plugin.shell.local

A Shell implementation that forks command locally

LocalShell() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.local.LocalShell

default constructor

M

main(String[]) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

main(String[]) - Static method in class org.icenigrid.gridsam.core.util.DriverResponseParser

tester

main(String[]) - Static method in class org.icenigrid.gridsam.core.Version

print version string

makeDir(String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To create the working dir for the indicated job, which is owned by the correponding linux user.

makeDirAndChmod(String, String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To create the dir for the indicated job, and chmod this directory.

ManagedRegistry - Class in org.icenigrid.gridsam.core.plugin.manager

Extension of a Hivemind Registry that provides automatically shutdown capability.

ManagedRegistry() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

create a ManagedRegistry.

ManagedRegistry(boolean) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

create a ManagedRegistry with optional auto-shutdown

MEMORY - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

mergeJobInstance(MutableJobInstance) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore

merge a job instance object

mergeJobInstance(MutableJobInstance) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

merge a job instance object

MIN_RETRY_INTERNAL - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

long : MIN_RETRY_INTERNAL .

moveFile(String, String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To move source file and write to the target file.

moveStageInToWork(String, String, String, String, JobContext) - Static method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStageUtil

after file copy operations in stage-in stage, copy all the stage-in files to user's work directory Setup 1.

MPI_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

JSDL MPI extension namespace string

MultiStageDRMConnector - Class in org.icenigrid.gridsam.core.plugin.connector.common

A DRMConnector that represents a sequential multi-stage process with which the individual stages can be scheduled separately

MultiStageDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

create a MultiStageDRMConnector

This task will progress if the job is not in any terminal state

MultiStageDRMConnector(String, MultiStageDRMConnector.ProgressCriteria) - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

create a MultiStageDRMConnector

MultiStageDRMConnector(DRMConnector, MultiStageDRMConnector.ProgressCriteria) - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

create a MultiStageDRMConnector

MultiStageDRMConnector.ProgressCriteria - Interface in org.icenigrid.gridsam.core.plugin.connector.common

interface defining a criteria object to define whether the pipeline should progress forward or be aborted.

MultiStageDRMConnector.ProgressInstruction - Class in org.icenigrid.gridsam.core.plugin.connector.common

progress constants

MultiStageDRMConnector.ProgressInstruction(String) - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressInstruction

protected constructor

MutableJobInstance - Interface in org.icenigrid.gridsam.core

Interface extending JobInstance providing mutable access to job status and other information

MYPROXY_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

JSDL MyProxy extension namespace string

MyProxyInfo - Class in org.icenigrid.gridsam.core.plugin.transfer.persistence

To process the gisftp file in file stage, we catch the Myproxy information which is contained in JSDL.

MyProxyInfo() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

MYPROXYINFO - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

N

NamedGroupRule - Class in org.icenigrid.gridsam.core.plugin.manager.auth.simple

NamedGroupRule() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.auth.simple.NamedGroupRule

create a named group

NamePattern - Class in org.icenigrid.gridsam.core.plugin.manager.auth.simple

NamePattern() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.auth.simple.NamePattern

NAMESPACES - Static variable in class org.icenigrid.gridsam.core.util.HPCGSupport

frequently used namespaces.

NCPUS - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

NegationRule - Class in org.icenigrid.gridsam.core.plugin.manager.auth.simple

NegationRule() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.auth.simple.NegationRule

NetFtpClientExtension - Class in org.icenigrid.gridsam.core.plugin.transfer.protocol

Purpose:
NetFtpClientExtension extends the FtpClient to get the Socket from FTP connection

NetFtpClientExtension() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.protocol.NetFtpClientExtension

NODE_LIST - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

NODES - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

NON_TERMINAL_CRITERIA - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

criteria implementation that will progress if the job is NOT in a terminal state

notifyChange(JobInstance) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

notify change to all listeners

NullCommandListener - Class in org.icenigrid.gridsam.core.plugin.shell

A CommandListener implementation that ignores all output stream events

NullDRMConnector - Class in org.icenigrid.gridsam.core.plugin.connector.common

DRMConnector implementation that does nothing

NullDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.NullDRMConnector

nullSafeGet(ResultSet, String[], Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum

Retrieve an instance of the mapped class from a JDBC resultset.

nullSafeSet(PreparedStatement, Object, int) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum

Write an instance of the mapped class to a prepared statement.

numberOfItems - Variable in class org.icenigrid.gridsam.core.util.XMLConfigReader

Number of items (<item> elements).

O

oConfigResources - Variable in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

configuration resources

oHibernateSession - Variable in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore

the hibernate session thread-local

oJobManager - Variable in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMSubmissionStage

The job manager on which to launch the job

OMII_GRIDSAM_SECURITY_CONFIG_NAME - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

OMII_GRIDSAM_SERVICE_PROPERTIES_NAME - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

OMII_GRIDSAM_SERVICE_PROPERTIES_NAME_USER_MAP - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

onChange(JobInstance) - Method in interface org.icenigrid.gridsam.core.JobInstanceChangeListener

notify the state of the JobInstance has changed

onChange(JobInstance) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

notify the state of the JobInstance has changed

onCollectionRecreate(Object, Serializable) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

onCollectionRemove(Object, Serializable) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

onCollectionUpdate(Object, Serializable) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

onDelete(Object, Serializable, Object[], String[], Type[]) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

Called before an object is deleted.

onErrorStreamData(ByteBuffer) - Method in class org.icenigrid.gridsam.core.plugin.shell.AccumulatedCommandListener

called when error stream data is available

onErrorStreamData(ByteBuffer) - Method in interface org.icenigrid.gridsam.core.plugin.shell.CommandListener

called when error stream data is available

onErrorStreamData(ByteBuffer) - Method in class org.icenigrid.gridsam.core.plugin.shell.DefaultCommandListener

called when error stream data is available

onErrorStreamData(ByteBuffer) - Method in class org.icenigrid.gridsam.core.plugin.shell.NullCommandListener

called when error stream data is available

onErrorStreamData(ByteBuffer) - Method in class org.icenigrid.gridsam.core.plugin.shell.PipedCommandListener

called when error stream data is available

onEvent(MutableJobInstance, String, String) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventAdapter

condor event received for a particular job

onEvent(MutableJobInstance, String, String) - Method in interface org.icenigrid.gridsam.core.plugin.connector.condor.CondorEventListener

condor event received for a particular job

onFlushDirty(Object, Serializable, Object[], Object[], String[], Type[]) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

Called when an object is detected to be dirty, during a flush.

onLoad(Object, Serializable, Object[], String[], Type[]) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

Called just before an object is initialized.

onOutputStreamData(ByteBuffer) - Method in class org.icenigrid.gridsam.core.plugin.shell.AccumulatedCommandListener

called when output stream data is available

onOutputStreamData(ByteBuffer) - Method in interface org.icenigrid.gridsam.core.plugin.shell.CommandListener

called when output stream data is available

onOutputStreamData(ByteBuffer) - Method in class org.icenigrid.gridsam.core.plugin.shell.DefaultCommandListener

called when output stream data is available

onOutputStreamData(ByteBuffer) - Method in class org.icenigrid.gridsam.core.plugin.shell.NullCommandListener

called when output stream data is available

onOutputStreamData(ByteBuffer) - Method in class org.icenigrid.gridsam.core.plugin.shell.PipedCommandListener

called when output stream data is available

onPrepareStatement(String) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

onSave(Object, Serializable, Object[], String[], Type[]) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

Called before an object is saved.

OPEN_DATABASE_CONNECT_FAULT - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

String .

org.icenigrid.gridsam.core - package org.icenigrid.gridsam.core

Package containing the core interfaces defining the JobManager API.

org.icenigrid.gridsam.core.hostenv - package org.icenigrid.gridsam.core.hostenv

org.icenigrid.gridsam.core.jmx - package org.icenigrid.gridsam.core.jmx

Package containing support class for Java Management Extension support in the GridSAM toolkit.

org.icenigrid.gridsam.core.jsdl - package org.icenigrid.gridsam.core.jsdl

Package containing support classes for handling Job Submission Description Language document.

org.icenigrid.gridsam.core.plugin - package org.icenigrid.gridsam.core.plugin

Package containing interfaces that define the Service Provider Interface (SPI) of GridSAM.

org.icenigrid.gridsam.core.plugin.connector.common - package org.icenigrid.gridsam.core.plugin.connector.common

Package containing common implementations of the DRMConnector interface.

org.icenigrid.gridsam.core.plugin.connector.condor - package org.icenigrid.gridsam.core.plugin.connector.condor

Package containing the Condor command-line based DRMConnector plugin.

org.icenigrid.gridsam.core.plugin.connector.data - package org.icenigrid.gridsam.core.plugin.connector.data

Package containing DRMConnector implementations that handle file staging using the Apache Virtual File System abstraction.

org.icenigrid.gridsam.core.plugin.connector.drmaa - package org.icenigrid.gridsam.core.plugin.connector.drmaa

Package containing DRMConnector plugin classes for submitting and managing jobs through the DRMAA API.

org.icenigrid.gridsam.core.plugin.connector.fork - package org.icenigrid.gridsam.core.plugin.connector.fork

Package containing the Fork DRMConnector plugin.

org.icenigrid.gridsam.core.plugin.connector.globus - package org.icenigrid.gridsam.core.plugin.connector.globus

Package containing the Globus Toolkit 2.4.3 DRMConnector plugin.

org.icenigrid.gridsam.core.plugin.connector.openpbs - package org.icenigrid.gridsam.core.plugin.connector.openpbs

org.icenigrid.gridsam.core.plugin.connector.pbs - package org.icenigrid.gridsam.core.plugin.connector.pbs

org.icenigrid.gridsam.core.plugin.manager - package org.icenigrid.gridsam.core.plugin.manager

Package containing the default implementation of the DRMConnector and JobManager abstraction.

org.icenigrid.gridsam.core.plugin.manager.auth - package org.icenigrid.gridsam.core.plugin.manager.auth

org.icenigrid.gridsam.core.plugin.manager.auth.simple - package org.icenigrid.gridsam.core.plugin.manager.auth.simple

org.icenigrid.gridsam.core.plugin.persistence.common - package org.icenigrid.gridsam.core.plugin.persistence.common

Package containing the implementation classes of the job persistence interfaces.

org.icenigrid.gridsam.core.plugin.persistence.hibernate - package org.icenigrid.gridsam.core.plugin.persistence.hibernate

Package containing an implementation of the job persistence API using the Hibernate toolkit over a relational database.

org.icenigrid.gridsam.core.plugin.scheduler - package org.icenigrid.gridsam.core.plugin.scheduler

Package containing implementation classes of the scheduler interface defined in the job management API.

org.icenigrid.gridsam.core.plugin.shell - package org.icenigrid.gridsam.core.plugin.shell

Package containing an abstraction of a Shell and a virtual file system.

org.icenigrid.gridsam.core.plugin.shell.local - package org.icenigrid.gridsam.core.plugin.shell.local

Package containing an implementation of the Shell API using the Java Runtime.exec() mechanism.

org.icenigrid.gridsam.core.plugin.shell.ssh - package org.icenigrid.gridsam.core.plugin.shell.ssh

Package containing an implementation of the Shell API.

org.icenigrid.gridsam.core.plugin.transfer.exception - package org.icenigrid.gridsam.core.plugin.transfer.exception

org.icenigrid.gridsam.core.plugin.transfer.persistence - package org.icenigrid.gridsam.core.plugin.transfer.persistence

org.icenigrid.gridsam.core.plugin.transfer.protocol - package org.icenigrid.gridsam.core.plugin.transfer.protocol

org.icenigrid.gridsam.core.plugin.transfer.provider - package org.icenigrid.gridsam.core.plugin.transfer.provider

org.icenigrid.gridsam.core.plugin.transfer.util - package org.icenigrid.gridsam.core.plugin.transfer.util

org.icenigrid.gridsam.core.plugin.vfs.gsiftp - package org.icenigrid.gridsam.core.plugin.vfs.gsiftp

Package containing a Apache Virtual File System plugin for the GridFTP protocol.

org.icenigrid.gridsam.core.support - package org.icenigrid.gridsam.core.support

org.icenigrid.gridsam.core.support.omii - package org.icenigrid.gridsam.core.support.omii

org.icenigrid.gridsam.core.util - package org.icenigrid.gridsam.core.util

org.icenigrid.gridsam.core.util.legacy - package org.icenigrid.gridsam.core.util.legacy

org.icenigrid.gridsam.integration.common - package org.icenigrid.gridsam.integration.common

OrRule - Class in org.icenigrid.gridsam.core.plugin.manager.auth.simple

OrRule() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.auth.simple.OrRule

create an Or rule

oScheduler - Variable in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

the delegate instance

OTHER_INFO - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

P

PARENT_JOB_ID - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

parse(String) - Static method in class org.icenigrid.gridsam.core.JobState

parse a state value into a JobState object

parseMyProxyInfoToString(MyProxyInfo) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

parseTimeString(double) - Static method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStage

parse double to time String.

parseXmlFile(String, boolean) - Method in class org.icenigrid.gridsam.core.util.XMLConfigReader

Parses an XML file and returns a DOM document.

PASSIVE_DATA_CONNECTION_MODE - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

FTP CONNECTION MODE : PASSIVE .

PasswordAuthenticationConfig - Class in org.icenigrid.gridsam.core.plugin.shell.ssh

Configuration bean for

PasswordAuthenticationConfig() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.PasswordAuthenticationConfig

pause() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

pauseAll() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

pauseFileJob(String) - Method in class org.icenigrid.gridsam.core.hostenv.FileProviderUtil

pause a file-transfer job.

pauseJob(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

pauseJob(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.AbstractFileProviderSupport

pause an FileJob: when an FileJob is running or to be run, the file is tranferring or just going to transfer, we can stop the tranferring process.

pauseJob(String) - Method in interface org.icenigrid.gridsam.core.support.FileProvider

Pause a job, then the transfer process will be paused.

pauseJobGroup(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

pauseTrigger(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

pauseTriggerGroup(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

PBSDRMConnector - Class in org.icenigrid.gridsam.core.plugin.connector.openpbs

Purpose: The DRMConnector defines job pipeline for OpenPBS, Torque and LSF.

PBSDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSDRMConnector

default constructor.

PBSDRMConnectorManager - Class in org.icenigrid.gridsam.core.plugin.connector.openpbs

PBSDRMConnectorManager.

PBSDRMConnectorManager() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSDRMConnectorManager

initialization.

PBSFileSystemProvider - Class in org.icenigrid.gridsam.core.plugin.connector.openpbs

PBSFileSystemProvider for file system.

PBSFileSystemProvider() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSFileSystemProvider

PBSFileSystemProvider initialization.

PBSSECURITYCONFIG_CLASSNAME - Static variable in interface org.icenigrid.gridsam.core.plugin.transfer.protocol.TransferAgent

ConfigUtil

PBSStage - Class in org.icenigrid.gridsam.core.plugin.connector.openpbs

submit job to local batch system via driver.

PBSStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStage

initialization.

PBSStageUtil - Class in org.icenigrid.gridsam.core.plugin.connector.openpbs

PBSStageUtil provides a set of functionality to support pool accounts and private working directory.

PBSStageUtil() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStageUtil

PBSStatusStage - Class in org.icenigrid.gridsam.core.plugin.connector.openpbs

To update the status fof running batchjob.
Update the status of running using quartz implementation .

PBSStatusStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStatusStage

PBSStatusStage - Class in org.icenigrid.gridsam.core.plugin.connector.pbs

DRMConnector implementation that checks PBS job status

PBSStatusStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.pbs.PBSStatusStage

PBSTerminalStage - Class in org.icenigrid.gridsam.core.plugin.connector.openpbs

Terminal DRMConnector stage handle the terminal operation to a job .

PBSTerminalStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSTerminalStage

PENDING - Static variable in class org.icenigrid.gridsam.core.JobState

The job is waiting for resource to become available in order to run

PERIODICAL_ACTIVE_STATUS_CRITERIA - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

Criteria implementation that support rerun and can be used to periodically check status of active.

PERIODICAL_STAGEIN_STATUS_CRITERIA - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

Criteria implementation that support rerun and can be used to periodically check status of stagein.

PERIODICAL_STAGEOUT_STATUS_CRITERIA - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

Criteria implementation that support rerun and can be used to periodically check status of stageout.

PersistenceException - Exception in org.icenigrid.gridsam.core.plugin

Exception thrown by the JobInstanceStore when a JobInstance cannot be persisted

PersistenceException() - Constructor for exception org.icenigrid.gridsam.core.plugin.PersistenceException

Constructs a new exception with null as its detail message.

PersistenceException(String) - Constructor for exception org.icenigrid.gridsam.core.plugin.PersistenceException

Constructs a new exception with the specified detail message.

PersistenceException(Throwable) - Constructor for exception org.icenigrid.gridsam.core.plugin.PersistenceException

Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).

PersistenceException(String, Throwable) - Constructor for exception org.icenigrid.gridsam.core.plugin.PersistenceException

Constructs a new exception with the specified detail message and cause.

PersistenceStore - Interface in org.icenigrid.gridsam.core.plugin

Interface defining a storage of persistent objects

PersistentUtil - Class in org.icenigrid.gridsam.core.plugin.transfer.persistence

PersistentUtil() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.persistence.PersistentUtil

PipedCommandListener - Class in org.icenigrid.gridsam.core.plugin.shell

CommandListener implementation that accumulates the output/error stream data as a string

PipedCommandListener() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.PipedCommandListener

default constructor

pipeStream(InputStream, int, CommandListener) - Method in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell

pipe the input of a stream to the output

populateGroups(Subject) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.Groups

populate the subject with group principals

populateJobStatus(JobInstance, JobStatusType) - Static method in class org.icenigrid.gridsam.core.support.GridSAMSupport

populate a job status type with information from the job instance

populatePermissions(String, Permissions) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileObject

populate a Permissions object according to the permission string

PORTAL_BATCH_DB_POOL - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

POSIXShell - Class in org.icenigrid.gridsam.core.plugin.shell

Class representing a POSIX compliant shell.

POSIXShell() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.POSIXShell

POST_PROCESS_SCRIPT - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

postFlush(Iterator) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

Called after a flush that actually ends in execution of the SQL statements required to synchronize in-memory state with the database.

PRE_PROCESS_SCRIPT - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

preFlush(Iterator) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.DefaultInterceptor

Called before a flush

Process - Interface in org.icenigrid.gridsam.core.plugin.shell

Interface defining a handle to a running command or process

progress(JobInstance) - Method in interface org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressCriteria

test whether the pipeline should progress to the next stage

PROPERTYKEY_CREDENTIAL - Static variable in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport

the globus credential

PublicKeyAuthenticationConfig - Class in org.icenigrid.gridsam.core.plugin.shell.ssh

Configuration bean for

PublicKeyAuthenticationConfig() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.PublicKeyAuthenticationConfig

Q

QNAME_SOAP_FAULTCODE_SERVER - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

the qualified name of the SOAP fault code

QNAME_SOAP_FAULTCODE_SERVER - Static variable in class org.icenigrid.gridsam.core.util.HPCGSupport

the qualified name of the SOAP fault code

QUEUE - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

R

readProxy(String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To read the proxy content.

reconfigure(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

reconfigure the Job Manager

reconfigure(String) - Method in interface org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerMBean

reconfigure the Job Manager

registerChangeListener(String, JobInstanceChangeListener) - Method in interface org.icenigrid.gridsam.core.JobManager

register a listener to listen to change to job

registerChangeListener(JobInstanceChangeListener) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore

register a listener to listen to change to JobInstances

registerChangeListener(String, JobInstanceChangeListener) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

register a listener to listen to change to job

registerChangeListener(JobInstanceChangeListener) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

register a listener to listen to change events of JobInstance

registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

handle shutdown

registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnectorManager

handle shutdown

registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnectorManager

handle shutdown

registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSDRMConnectorManager

handle shutdown.

registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnectorManager

registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.DefaultAuthorisation

registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

the registry is closing down the store

registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore

the registry is closing down the store

registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

notified by Hivemind that the registry is being shutdown.

registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.shell.local.LocalShell

The registry is notifying of shutdown

registryDidShutdown() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell

The registry is notifying of shutdown

RegistryUtil - Class in org.icenigrid.gridsam.core.plugin.transfer.util

Purpose:
This is an Adapter Class to get File job Storage Object

RegistryUtil() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.util.RegistryUtil

REMOTE_URL - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

removeCondorEventListener(CondorEventListener) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

remove a condor event listener

removeGlobalJobListener(JobListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

removeGlobalTriggerListener(TriggerListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

removeJobListener(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

removeSchedulerListener(SchedulerListener) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

removeTriggerListener(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

replace(Object, Object, Object) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum

RERUN_FAMILY_ID - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

RERUN_FAMILY_LATEST_JOBID - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

RERUN_MODE_EXECUTE_AND_STAGE_OUT - Static variable in class org.icenigrid.gridsam.core.util.HPCGSupport

Rerun mode "ExecuteAndStageOut" : execute + stageOut

RERUN_MODE_FULL - Static variable in class org.icenigrid.gridsam.core.util.HPCGSupport

Rerun mode "Full" : stageIn + execute + stageOut.

RERUN_MODE_ONLY_EXECUTE - Static variable in class org.icenigrid.gridsam.core.util.HPCGSupport

Rerun mode "OnlyExecute" : execute only.

RERUN_MODE_ONLY_STAGE_IN - Static variable in class org.icenigrid.gridsam.core.util.HPCGSupport

Rerun mode "OnlyStageIn" : stageIn only.

RERUN_MODE_ONLY_STAGE_OUT - Static variable in class org.icenigrid.gridsam.core.util.HPCGSupport

Rerun mode "OnlyStageOut" : stageOut only.

RERUN_MODE_STAGE_IN_AND_EXECUTE - Static variable in class org.icenigrid.gridsam.core.util.HPCGSupport

StageInAndExecute mode "Full" : stageIn + execute.

RERUN_START_STATE - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

rerunJob(String, JobState, JobDefinitionDocument, boolean) - Method in interface org.icenigrid.gridsam.core.JobManager

Rerun a job from a specified stage and reuse the same working directory.

rerunJob(String, JobState, JobDefinitionDocument, boolean) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

rerun a job

RerunUtil - Class in org.icenigrid.gridsam.core.util

Purpose:
Whether is it a valid state for rerun.

RerunUtil() - Constructor for class org.icenigrid.gridsam.core.util.RerunUtil

rescheduleJob(String, String, Trigger) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

resolveDRMConnector(Registry) - Method in class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor

resolve the DRMConnector instance from the description

resolveTrigger(String, String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor

get the trigger associated with this DRMConnector

ResourceRegistry - Class in org.icenigrid.gridsam.core.plugin.manager

A ManagedRegistry that loads object specified by the hivemind configuration loaded as classpath resources.

ResourceRegistry(String[]) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.ResourceRegistry

create a ResourceRegistry that supports auto shutdown

ResourceRegistry(String[], boolean) - Constructor for class org.icenigrid.gridsam.core.plugin.manager.ResourceRegistry

create a ResourceRegistry

resumeAll() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

resumeJob(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

resumeJob(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.AbstractFileProviderSupport

resume an FileJob: when an FileJob is paused and the tranfer action is stopped, we can restart this FileJob and go on the tranferring process.

resumeJob(String) - Method in interface org.icenigrid.gridsam.core.support.FileProvider

Resume a paused job, then the transfer process can be resumed.

resumeJobGroup(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

resumeTrigger(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

resumeTriggerGroup(String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

returnedClass() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum

The class returned by nullSafeGet().

revise(Configuration) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

revise the configuration before the hibernate session builder is created

revise(Configuration) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernatePersistenceStore

revise the configuration before the hibernate session builder is created

revise(Configuration) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

revise the configuration before the hibernate session builder is created

rollback() - Method in interface org.icenigrid.gridsam.core.plugin.Transaction

rollback a previously started transaction

run() - Method in interface org.icenigrid.gridsam.core.plugin.JobContext.ThrowableRunnable

When an object implementing interface ThrowableRunnable is used to create a thread, starting the thread causes the object's run method to be called in that separately executing thread.

run() - Method in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell.PipeRunnable

RUN_FOR_EXECUTION_CRITERIA - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

criteria implementation that indicate this stage will run for execution.

RUN_FOR_STAGEIN_CRITERIA - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

criteria implementation that indicate this stage will run for stage in.

RUN_FOR_STAGEOUT_CRITERIA - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

criteria implementation that indicate this stage will run for stage out.

runInterruptable(Runnable) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext

run a block of code (i.e.

runInterruptable(JobContext.ThrowableRunnable) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext

run a block of code (i.e.

runInterruptable(JobContext.ThrowableRunnable) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

run a block of code (i.e.

runInterruptable(Runnable) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

run a block of code (i.e.

S

sanityCheck(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage

sanity check

sanityCheck(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSSubmitStage

sanity check

saveCredential(JobContext, GSSCredential) - Static method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusCredentialSupport

save the MyProxy credential to the job context

schedule(DRMConnector) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext

schedule the given DRMConnector for immediate execution in this job context for the current job

schedule(String) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext

schedule the given named DRMConnector for immediate execution in this job context for the current job

schedule(DRMConnector, long) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext

schedule the given DRMConnector for repeated execution in this job context for the current job

schedule(String, long) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext

schedule the given named DRMConnector for immediate execution in this job context for the current job

schedule(DRMConnector, String) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext

schedule the given DRMConnector for repeated execution in this job context for the current job

schedule(String, String) - Method in interface org.icenigrid.gridsam.core.plugin.JobContext

schedule the given named DRMConnector for immediate execution in this job context for the current job

schedule(JobInstance, DRMConnector) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext

schedule the given DRMConnector for immediate execution in this job context for the given job

schedule(JobInstance, String) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext

schedule the given named DRMConnector for immediate execution in this job context for the given job

schedule(JobInstance, DRMConnector, long) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext

schedule the given DRMConnector for repeated execution in this job context for the given job

schedule(JobInstance, String, long) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext

schedule the given named DRMConnector for immediate execution in this job context for the given job

schedule(JobInstance, DRMConnector, String) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext

schedule the given DRMConnector for repeated execution in this job context for the given job

schedule(JobInstance, String, String) - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext

schedule the given named DRMConnector for immediate execution in this job context for the given job

schedule(DRMConnector) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

schedule the given DRMConnector for immediate execution in this job context

schedule(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

schedule the given named DRMConnector for immediate execution in this job context

schedule(DRMConnector, long) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

schedule the given DRMConnector for repeated execution in this job context

schedule(String, long) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

schedule the given named DRMConnector for immediate execution in this job context

schedule(DRMConnector, String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

schedule the given DRMConnector for repeated execution in this job context

schedule(String, String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

schedule the given named DRMConnector for immediate execution in this job context

schedule(JobInstance, DRMConnector) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

schedule the given DRMConnector for immediate execution in this job context for the given job

schedule(JobInstance, String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

schedule the given named DRMConnector for immediate execution in this job context for the given job

schedule(JobInstance, DRMConnector, long) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

schedule the given DRMConnector for repeated execution in this job context for the given job

schedule(JobInstance, String, long) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

schedule the given named DRMConnector for immediate execution in this job context for the given job

schedule(JobInstance, DRMConnector, String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

schedule the given DRMConnector for repeated execution in this job context for the given job

schedule(JobInstance, String, String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

schedule the given named DRMConnector for immediate execution in this job context for the given job

schedule(DRMConnectorDescriptor) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

schedule an execution of a DRMConnector defined by the descriptor

scheduleImmediately() - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext

get the DRMConnector that has been added by the schedule operations to be scheduled immediately.

scheduleImmediately() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

get the DRMConnector that has been added by the schedule operations to be scheduled immediately

scheduleJob(JobDetail, Trigger) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

scheduleJob(Trigger) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

SchedulerDelegate - Class in org.icenigrid.gridsam.core.plugin.scheduler

A Quartz Scheduler implementation that delegates all calls to the Scheduler interface to another Scheduler instance.

SchedulerDelegate(Scheduler) - Constructor for class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

delegate all calls to this Scheduler instance to the supplied delegatee

SchedulerDelegate(List) - Constructor for class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

create a SchedulerDelegate with a properties object that can be used to construct an internal Quartz Scheduler instance

SCHEMAS - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.URLParser

screenOutput(String, String, String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To get the screen output of the indicated local batch job.

searchJobs(String, Object[]) - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.AbstractFileProviderSupport

search FileJobs: search FileJobs which satisfy the serchCondtion

SecurityConfigUtil - Class in org.icenigrid.gridsam.core.util

To help reading the configuration of the securtiy.

SecurityConfigUtil() - Constructor for class org.icenigrid.gridsam.core.util.SecurityConfigUtil

SecurityProvider - Interface in org.icenigrid.gridsam.core.support

Purpose:
To provide security functions.

SecurityProviderSupport - Class in org.icenigrid.gridsam.core.support.omii

Purpose:
To implement SecurityProvider interface in OMII environment.

SecurityProviderSupport() - Constructor for class org.icenigrid.gridsam.core.support.omii.SecurityProviderSupport

SecurityProviderUtil - Class in org.icenigrid.gridsam.core.hostenv

Purpose:
Use hivermind to call interface SecurityProvider and get caller'DN, siteInfo.

SecurityProviderUtil() - Constructor for class org.icenigrid.gridsam.core.hostenv.SecurityProviderUtil

SEGMENT_LENGTH - Static variable in interface org.icenigrid.gridsam.core.plugin.transfer.protocol.TransferAgent

portion file SEGMENT_LENGTH .

select(XmlObject, String) - Static method in class org.icenigrid.gridsam.core.plugin.connector.common.XmlObjectCategory

'select' method on a XmlObject Node for performing xpath selection

select(XmlObject, String, Map) - Static method in class org.icenigrid.gridsam.core.plugin.connector.common.XmlObjectCategory

'select' method on a XmlObject Node for performing xpath selection

select(XmlObject, String, Map, Closure) - Static method in class org.icenigrid.gridsam.core.plugin.connector.common.XmlObjectCategory

'select' method on a XmlObject Node for performing xpath selection

selectNodes(XmlObject, String) - Static method in class org.icenigrid.gridsam.core.support.GridSAMSupport

select a list of nodes from the document determined by the xpath expression

selectNodes(Node, String) - Static method in class org.icenigrid.gridsam.core.util.HPCGSupport

select a list of nodes from the document determined by the xpath expression.

selectSingleNode(XmlObject, String) - Static method in class org.icenigrid.gridsam.core.support.GridSAMSupport

select a single node from the document determined by the xpath expression

selectSingleNode(Node, String) - Static method in class org.icenigrid.gridsam.core.util.HPCGSupport

select a single node from the document determined by the xpath expression

sendUrgentData(byte) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.NetFtpClientExtension

send Urgent Data

SEP - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

file separator

SEPARATOR_STRING - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.URLParser

The separator character used in file paths.

SERVER_WSDD - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

ServerConfig - Class in org.icenigrid.gridsam.core.plugin.shell.ssh

Configuration bean for element

ServerConfig() - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

ServiceInvoker - Interface in org.icenigrid.gridsam.core.support

Purpose:
To invoke a service.

setAction(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the transfer action of the AftJob.

setAddTime(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the submit time of the AftJob, this is need when you submit an AftJob to the system

setAppend(boolean) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

setApplicationName(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setApplicationVersion(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setAppName(String) - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

set app name.

setArguments(List) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setBeginTime(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the time when the AftJob begin to be schedulered

setCondorLogFile(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

set condor log file location

setCondorRmCommand(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

set the condor_rm command

setCondorSubmitCommand(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage

set the full path of the condor_submit command used by DRMConnector

setConfigFile(String) - Method in interface org.icenigrid.gridsam.core.support.ConfigUtilProvider

Set the config file.

setConfigFile(String) - Method in class org.icenigrid.gridsam.core.support.omii.ConfigUtilSupport

set config file path and init XMLConfigReader instance.

setCopyToSpool(boolean) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage

should the binary be copy to the condor spool directory if the executable is staged in

setCopyToSpool(boolean) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSSubmitStage

should the binary be copy to the PBS spool directory if the executable is staged in

setCputime(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setCpuTimeLimit(int) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setDate(Timestamp) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage

set the date when this stage is entered

setDescription(String) - Method in interface org.icenigrid.gridsam.core.JobStage

set the description associated with this stage

setDescription(String) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage

set the description associated with this stage

setDescription(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setDestURL(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the transfer file's destination URL

setEndTime(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the completed time of AftJob

setEnvironment(Map) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setErrinfo(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setError(String) - Method in class org.icenigrid.gridsam.core.util.FileDriverResponseParser

setError(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setExecutable(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setGSSCredential(FileSystemOptions, GSSCredential) - Method in class org.icenigrid.gridsam.core.plugin.vfs.gsiftp.GSIFTPFileSystemConfigBuilder

set the access credential

setHost(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

setID(String) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

set the job ID

setIndividualCPUCount(double) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setInput(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setInterrupted(boolean) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobContext

set the interrupted flag

setJobDataMap(FileJobInfo) - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.FileJobMapHelper

get the paramters from the AftJobInfo and set it to the JobDataMap

setJobDefinition(JobDefinitionDocument) - Method in interface org.icenigrid.gridsam.core.MutableJobInstance

set the job description

setJobDefinition(JobDefinitionDocument) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

set the job description

setJobID(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor

set the job id this drmconnector is schedule to perform on

setJobid(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setJobManager(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMSubmissionStage

setJobName(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the jobName of the AftJob

setJobName(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setJobProject(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setJobStages(List) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

set the job status history

setKeyfile(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PublicKeyAuthenticationConfig

setLocalUser(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the localUser The localUser including user-name and group-name

setMaximumRetryCount(int) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMStatusStage

set the retry count

setMaximumRetryCount(int) - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSStatusStage

set the retry count.

setMaxRetryCount(int) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the maxRetryCout

setMem(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setMonitoringPeriod(long) - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnector

set the wait between monitoring cycle

setMonitoringPeriod(long) - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnector

set the wait between monitoring cycle.

setMonitoringPeriod(long) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnector

set the wait between monitoring cycle

setMonitoringPeriod(long) - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSDRMConnector

set the wait between monitoring cycle.

setMonitoringPeriod(long) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnector

set the wait between monitoring cycle

setMyProxyInfo(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

setName(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.Group

set the name

setName(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.NamedGroupRule

set the name

setName(String) - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

set job name.

setNcpus(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setNext(String, MultiStageDRMConnector.ProgressCriteria) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

set the next DRMConnector in the chain

setNext(DRMConnector, MultiStageDRMConnector.ProgressCriteria) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

set the next DRMConnector in the chain

setNext(String, long, MultiStageDRMConnector.ProgressCriteria) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

set the next DRMConnector in the chain

setNext(DRMConnector, long, MultiStageDRMConnector.ProgressCriteria) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

set the next DRMConnector in the chain

setNext(String, String, MultiStageDRMConnector.ProgressCriteria) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

set the next DRMConnector in the chain

setNext(DRMConnector, String, MultiStageDRMConnector.ProgressCriteria) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

set the next DRMConnector in the chain

setNodeList(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setNodes(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setOriginalLength(long) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

setOtherInfo(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the otherInfo

setOtherInfo(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setOutinfo(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setOutput(String) - Method in class org.icenigrid.gridsam.core.util.FileDriverResponseParser

setOutput(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setPassphrase(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PublicKeyAuthenticationConfig

setPassword(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PasswordAuthenticationConfig

setPasswordAuthentication(PasswordAuthenticationConfig) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

setPattern(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.NamePattern

set the pattern

setPBSJobStatusCommand(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.PBSStatusStage

set the PBS Job Status command

setPBSJobStatusCommand(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnectorManager

set the PBS Job Status command

setPBSNamedQueue(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSSubmitStage

setPBSRmCommand(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnectorManager

set the PBS_rm command

setPBSSubmitCommand(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSSubmitStage

set the full path of the PBS qsub command used by DRMConnector

setPBSTailCommand(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnectorManager

set PBS log file location

setPort(int) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

setPosixShellPath(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.POSIXShell

set the path to the posix shell executable

setPostProcessContent(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setPreference(int) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.InlineProperties

set the preference ranking associated with the properties.

setPreProcessContent(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setProperties(Map) - Method in interface org.icenigrid.gridsam.core.MutableJobInstance

set the properties associated with the job

setProperties(Properties) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector

set properties

setProperties(Map) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

set the properties associated with the job

setProtocol(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the transfer protocol which AftJob is used

setProvider(FileSystemProvider) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DelegatingFileSystemProvider

set the delegate

setProxyLifetime(int) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

setProxyPassphrase(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

setProxyServerDN(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

setProxyServerHost(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

setProxyServerPort(int) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

setProxyUsername(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.MyProxyInfo

setPublicKeyAuthentication(PublicKeyAuthenticationConfig) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

setQueue(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setRegistry(Registry) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

set the object registry

setReservedField(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

setResponseInfo(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the responseInfo of the AftJob, when the AftJob sucessfully completes, the responseInfo is " sucessfully to transfer file ", when the AftJob fails, the responseInfo is the exception which leads the AftJob fail.

setRetryCount(int) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the retryCount of the AftJob

setRetryInterval(long) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the retryInterval of the AftJob

setRootFileSystemURI(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DefaultFileSystemProvider

set the root file system URI

setSchedule(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

set the schedule

setSchedule(long) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

set the schedule

setSchedule(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor

set the schedule as a cron expression

setSchedule(long) - Method in class org.icenigrid.gridsam.core.plugin.manager.DRMConnectorDescriptor

set the schedule as a repeat interval

setScreenErrFilePath(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setScreenOutFilePath(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setScript(String) - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

set script(executable).

setScriptResource(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.GroovyDRMConnector

set script location

setShell(Shell) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

set the shell to use

setShell(Shell) - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.AbstractShellStage

set the shell to use

setShell(Shell) - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ShellBasedFileSystemProvider

set the shell to inherit the file system from

setShell(Shell) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnectorManager

set the shell to use

setSourceURL(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the transfer file's source URL

setSpoolDirectory(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemInitStage

set spooling directory

setSpoolDirectory(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.data.TempFileSystemInitStage

Set spooling directory.

setSpoolDirectory(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.FileSystemInitStage

set spooling directory

setStageInList(List) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setStageOutList(List) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setState(JobState) - Method in interface org.icenigrid.gridsam.core.JobStage

set the state

setState(JobState) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage

set the state

setStatus(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the status of the AftJob

setStatus(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setStderr(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setStdout(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setSuccess(boolean) - Method in class org.icenigrid.gridsam.core.util.FileDriverResponseParser

setTailCommand(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

set condor log file location

setTargetQueue(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setTotalDiskSpace(double) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setTotalLength(long) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the totalLength of the file which AftJob transfers

setTotalPhysicalMemory(double) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setTotalResourceCount(double) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setTotalVirtualMemory(double) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setTransferredLength(long) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the transferredLength of the file which AftJob transfers

setUp() - Method in class org.icenigrid.gridsam.integration.common.AbstractJobManagerTestCase

setup the fixture

setupThread() - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

setUser(String) - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

setUserDN(String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInfo

set the userDN

setUserName(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setValues(String) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.InlineProperties

add new entries

setVersion(long) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage

set version

setVersion(long) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

set version

setVmem(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setWalltime(String) - Method in class org.icenigrid.gridsam.core.util.DriverResponseParser

setWallTimeLimit(int) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setWorkingDirectory(String) - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

setXJSDL(JobDefinitionDocument) - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

set jsdl document.

setXpath(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.auth.simple.XPathRule

set the xpath

SFTFileProviderSupport - Class in org.icenigrid.gridsam.core.plugin.transfer.provider

Purpose:
this class implements interrupt and submit Method for SFT.

SFTFileProviderSupport() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.provider.SFTFileProviderSupport

SFTFileTransferJob - Class in org.icenigrid.gridsam.core.plugin.transfer.provider

Purpose:
This class process the synchronous file transfer job and implement a resume/retry mechanism.

SFTFileTransferJob() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.provider.SFTFileTransferJob

sftJobExecutionCheck(FileJobInfo) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.provider.FileProcessHelper

sftJobWasExecuted(FileJobInfo) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.provider.FileProcessHelper

when a AftJob is completely, this method can change the AftJob's statu to COMPLETED and delete the AftJob from the scheduler

sftJobWasFailled(FileJobInfo, Exception) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.provider.FileProcessHelper

when a AftJob is failed, this method can change the AftJob's statu to FAILED and delete the AftJob from the scheduler

SFTP - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

SFTP_DELAY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

SFTP_PROTOCOL - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

SFTP protocol .

SFTP_RETRY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

Shell - Interface in org.icenigrid.gridsam.core.plugin.shell

Interface defining a shell within which commands can be run

ShellBasedCondorDRMConnector - Class in org.icenigrid.gridsam.core.plugin.connector.condor

MultiStageDRMConnector implementation that performs shell based forking

ShellBasedCondorDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnector

create a MultiStageDRMConnector

This task will progress if the job is not in any terminal state

ShellBasedCondorDRMConnectorManager - Class in org.icenigrid.gridsam.core.plugin.connector.condor

DRMConnectorManager implementation for the shell-based condor integration

ShellBasedCondorDRMConnectorManager() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

default constructor

ShellBasedCondorSubmitStage - Class in org.icenigrid.gridsam.core.plugin.connector.condor

MultiStageDRMConnector.Stage implementation for performing shell-based condor submit.

ShellBasedCondorSubmitStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage

ShellBasedFileSystemProvider - Class in org.icenigrid.gridsam.core.plugin.connector.fork

FileSystemProvider implementation that exposes the file system from the associated shell

ShellBasedFileSystemProvider() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.fork.ShellBasedFileSystemProvider

ShellBasedPBSDRMConnector - Class in org.icenigrid.gridsam.core.plugin.connector.pbs

MultiStageDRMConnector implementation that performs shell based forking

ShellBasedPBSDRMConnector() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnector

create a MultiStageDRMConnector

This task will progress if the job is not in any terminal state

ShellBasedPBSDRMConnectorManager - Class in org.icenigrid.gridsam.core.plugin.connector.pbs

DRMConnectorManager implementation for the shell-based PBS integration

ShellBasedPBSDRMConnectorManager() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnectorManager

default constructor

ShellBasedPBSSubmitStage - Class in org.icenigrid.gridsam.core.plugin.connector.pbs

MultiStageDRMConnector.Stage implementation for performing shell-based PBS submit.

ShellBasedPBSSubmitStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSSubmitStage

shutdown() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

shutdown the JobManager

shutdown() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean

shutdown the JobManager

shutdown() - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

shutdown() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

shutdown(boolean) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

SKIP - Static variable in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector.ProgressInstruction

skip this task and move on to the next

sLog - Static variable in class org.icenigrid.gridsam.core.hostenv.UserMappingUtil

logger.

sLog - Static variable in class org.icenigrid.gridsam.core.plugin.connector.data.StageInStage

logger

sqlTypes() - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobStateEnum

Return the SQL type codes for the columns mapped by this type.

src() - Method in class org.icenigrid.gridsam.core.util.legacy.FileStageDesc

SSHShell - Class in org.icenigrid.gridsam.core.plugin.shell.ssh

Shell implementation that uses SSH to execute command locally or remotely

SSHShell(List) - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell

create a SSHShell with the given configuration bean

SSHShell(ServerConfig) - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell

create a SSHShell with the given configuration bean

SSHShell(String, int, String, String) - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell

create a SSHShell using username/password authentication

SSHShell(String, int, String, String, String) - Constructor for class org.icenigrid.gridsam.core.plugin.shell.ssh.SSHShell

create a SSHShell using a PKI authentication

STAGED_IN - Static variable in class org.icenigrid.gridsam.core.JobState

The job's data have been staged into the job execution environment

STAGED_OUT - Static variable in class org.icenigrid.gridsam.core.JobState

The job's data have been staged out from the job execution environment

stageIn(Map) - Method in class org.icenigrid.gridsam.core.hostenv.FileProviderUtil

stage in a file.

STAGEIN_FILE_MAP - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

StageInStage - Class in org.icenigrid.gridsam.core.plugin.connector.data

DRMConnector Stage that stages files (according to the jsdl:DataStaging elements) into the administrator configured file system.

StageInStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.StageInStage

StageInStatusStage - Class in org.icenigrid.gridsam.core.plugin.connector.data

While stage-in file using synchronous mode, StageInStatusStage advance to STAGED_IN.

StageInStatusStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.StageInStatusStage

StageInSubmitStage - Class in org.icenigrid.gridsam.core.plugin.connector.data

Submit File StageIn job.

StageInSubmitStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.StageInSubmitStage

stageOut(Map) - Method in class org.icenigrid.gridsam.core.hostenv.FileProviderUtil

stage out a file.

STAGEOUT_FILE_MAP - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

StageOutStage - Class in org.icenigrid.gridsam.core.plugin.connector.data

DRMConnector Stage that stages files (according to the jsdl:DataStaging elements) out of the administrator configured file system to the specified destination.

StageOutStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.StageOutStage

StageOutStatusStage - Class in org.icenigrid.gridsam.core.plugin.connector.data

While stage-out file using synchronous mode, StageInStatusStage advance to STAGED_OUT.

StageOutStatusStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.StageOutStatusStage

StageOutSubmitStage - Class in org.icenigrid.gridsam.core.plugin.connector.data

Submit File StageOut job.

StageOutSubmitStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.StageOutSubmitStage

STAGING_IN - Static variable in class org.icenigrid.gridsam.core.JobState

The job's data are staging into the job execution environment

STAGING_OUT - Static variable in class org.icenigrid.gridsam.core.JobState

The job's data are staging out from the job execution environment

StandardJobProperties - Class in org.icenigrid.gridsam.core

Created by IntelliJ IDEA.

StandardJobProperties() - Constructor for class org.icenigrid.gridsam.core.StandardJobProperties

start() - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

START_LOCATION - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

startJob(String) - Method in interface org.icenigrid.gridsam.core.JobManager

Start a pending job.

startJob(String[]) - Method in interface org.icenigrid.gridsam.core.JobManager

Start a set of pending jobs.

startJob(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

Start a pending job.

startJob(String[]) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

StateTransitionException - Exception in org.icenigrid.gridsam.core

Exception thrown by a JobStateMachine when a JobInstance's state cannot be advanced

StateTransitionException() - Constructor for exception org.icenigrid.gridsam.core.StateTransitionException

Constructs a new exception with null as its detail message.

StateTransitionException(String) - Constructor for exception org.icenigrid.gridsam.core.StateTransitionException

Constructs a new exception with the specified detail message.

StateTransitionException(Throwable) - Constructor for exception org.icenigrid.gridsam.core.StateTransitionException

Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).

StateTransitionException(String, Throwable) - Constructor for exception org.icenigrid.gridsam.core.StateTransitionException

Constructs a new exception with the specified detail message and cause.

status(String, String, String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To query local batch job status.

STATUS_BRGIN - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

the AftJob's statu: BEGIN .

STATUS_CANCELED - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

the AftJob's statu: CANCELED .

STATUS_COMPLETED - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

the AftJob's statu: COMPLETED .

STATUS_FAILED - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

the AftJob's statu: FAILED .

STATUS_IN_DATABASE - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

status field name in database .

STATUS_PAUSED - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

the AftJob's statu: PAUSED .

STATUS_RUN - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

the AftJob's statu: RUN .

STDERR - Static variable in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell

id for standard error stream

STDIN - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

STDOUT - Static variable in class org.icenigrid.gridsam.core.plugin.shell.AbstractShell

id for standard output stream

STDOUT - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

stdOutErr(String, String, String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To get the stdout and stderr file name of the indicated local batch job.

STERR - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

stopAllFileJob(JobContext) - Static method in class org.icenigrid.gridsam.core.util.FileJobCancelUtil

stop all file job.

STORAGE_SEGMENT_LENGTH - Static variable in interface org.icenigrid.gridsam.core.plugin.transfer.protocol.TransferAgent

storage block size 20M

string2Document(String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

convert a XML String into the XML Document object.

string2File(String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

create a file in the intended location , and then inject the content into this file.

string2FileAppend(String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To write the string into the indicated file.

SubmissionException - Exception in org.icenigrid.gridsam.core

Exception thrown when there is an error in the job submission process

SubmissionException() - Constructor for exception org.icenigrid.gridsam.core.SubmissionException

Constructs a new exception with null as its detail message.

SubmissionException(String) - Constructor for exception org.icenigrid.gridsam.core.SubmissionException

Constructs a new exception with the specified detail message.

SubmissionException(String, Throwable) - Constructor for exception org.icenigrid.gridsam.core.SubmissionException

Constructs a new exception with the specified detail message and cause.

SubmissionException(Throwable) - Constructor for exception org.icenigrid.gridsam.core.SubmissionException

Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).

submit(String, String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

To submit local batch job.

SUBMIT_FILEJOB_FAULT - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

String .

submitAFTFileJob(FileJobInfo) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.provider.AFTFileProviderSupport

Provides a static submit interface.

submitGlobusJob(JobContext, AbstractRslNode, String, GSSCredential) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMSubmissionStage

Submit a RSL document to a GRAM job manager.

submitJob(JobDefinitionDocument) - Method in interface org.icenigrid.gridsam.core.JobManager

submit a job to this JobManager instance.

submitJob(JobDefinitionDocument[], boolean) - Method in interface org.icenigrid.gridsam.core.JobManager

submit a set of jobs to this JobManager instance as a bulk operation.

submitJob(JobDefinitionDocument, boolean) - Method in interface org.icenigrid.gridsam.core.JobManager

submit a job to this JobManager instances

submitJob(JobDefinitionDocument) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

submit a job to this JobManager instance.

submitJob(JobDefinitionDocument[], boolean) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

submitJob(JobDefinitionDocument, boolean) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

submit a job to this JobManager instances

submitJob(Map) - Method in class org.icenigrid.gridsam.core.plugin.transfer.provider.AbstractFileProviderSupport

submit an FileJob: an FileJob is a job which can transfer file.when we submit an FileJob, its status is BEGIN.

submitJob(Map) - Method in interface org.icenigrid.gridsam.core.support.FileProvider

Submit a asynchronous and reliable file transfer job.

submitJobThroughDrmaa(JobContext, Session) - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaSubmissionStage

fork the job using the attached Shell

SupportContants - Class in org.icenigrid.gridsam.core.support

Purpose:
To define the constants of host enviornment support.

SupportContants() - Constructor for class org.icenigrid.gridsam.core.support.SupportContants

suspend() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

suspend the JobManager.

suspend() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean

suspend the JobManager.

T

tail(String, int, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

get tail string of the file.

tearDown() - Method in class org.icenigrid.gridsam.integration.common.AbstractJobManagerTestCase

tear down the fixture

TEMP_DIR - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

TempFileSystemCleanupStage - Class in org.icenigrid.gridsam.core.plugin.connector.data

DRMConnector implementation that cleans up the temp staing directory.

TempFileSystemCleanupStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.TempFileSystemCleanupStage

TempFileSystemInitStage - Class in org.icenigrid.gridsam.core.plugin.connector.data

DRMConnector implementation that initialises the temp staging directory using the given shell script and exposes a job property.

TempFileSystemInitStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.TempFileSystemInitStage

TerminalStage - Class in org.icenigrid.gridsam.core.plugin.connector.common

A terminal stage that marks the job as terminated

TerminalStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.TerminalStage

terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.AbstractDRMConnectorManager

called by the Job Manager to terminate the job previously handled by this DRMConnectorManager This implementation schedules the DRMConnector named "gridsam.TerminalStage", which will mark the job as terminated.

terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.common.TerminalStage

handle job termination.

terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorDRMConnectorManager

called by the Job Manager to terminate the job previously handled by this DRMConnectorManager

terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaDRMConnectorManager

called by the Job Manager to terminate the job previously handled by this DRMConnectorManager

terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkDRMConnectorManager

called by the Job Manager to terminate the job previously handled by this DRMConnectorManager

terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GlobusDRMConnectorManager

called by the Job Manager to terminate the job previously handled by this DRMConnectorManager This implementation schedules the DRMConnector named "gridsam.TerminalStage", which will mark the job as terminated.

terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.globus.GRAMTerminateStage

handle job termination.

terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.PBSDRMConnectorManager

called by the Job Manager to terminate the job previously handled by this DRMConnectorManager.

terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSDRMConnectorManager

called by the Job Manager to terminate the job previously handled by this DRMConnectorManager

terminate(JobContext) - Method in interface org.icenigrid.gridsam.core.plugin.DRMConnectorManager

called by the Job Manager to terminate the job previously handled by this DRMConnectorManager

terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.manager.DelegatingDRMConnectorManager

called by the Job Manager to terminate the job previously handled by this DRMConnectorManager

terminate(JobContext) - Method in class org.icenigrid.gridsam.core.plugin.manager.LegacyDRMConnectorManager

called by the Job Manager to terminate the job previously handled by this DRMConnectorManager

TERMINATED - Static variable in class org.icenigrid.gridsam.core.JobState

The job has been terminated by user

terminateJob(String) - Method in interface org.icenigrid.gridsam.core.JobManager

terminate the job identified

terminateJob(String[]) - Method in interface org.icenigrid.gridsam.core.JobManager

terminate the jobs identified

terminateJob(String[]) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

terminateJob(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

terminate the job identified

TERMINATING - Static variable in class org.icenigrid.gridsam.core.JobState

The job is being terminated by user

TEST_FTP_SERVER - Static variable in class org.icenigrid.gridsam.integration.common.AbstractJobSubmissionTestCase

root url of the test ftp server

testGetStatusOfAnUnknownJob() - Method in class org.icenigrid.gridsam.integration.common.AbstractJobSubmissionTestCase

test case: attempt to get the status of an unknown job should result in an error

testSubmitCatJobIncludingStaging() - Method in class org.icenigrid.gridsam.integration.common.AbstractJobSubmissionTestCase

test case: a job with staging should complete with a reasonable time

testSubmitEchoEnvironmentJob() - Method in class org.icenigrid.gridsam.integration.common.AbstractJobSubmissionTestCase

test case: job that requires environment settings

testSubmitInvalidStagingJob() - Method in class org.icenigrid.gridsam.integration.common.AbstractJobSubmissionTestCase

test case: a valid job description with unknown staging should result in an error

testSubmitJobWithInvalidApplication() - Method in class org.icenigrid.gridsam.integration.common.AbstractJobSubmissionTestCase

test case: a valid job description with unknown executable should result in an error

testSubmitPureStagingJob() - Method in class org.icenigrid.gridsam.integration.common.AbstractJobSubmissionTestCase

test case: job that requires environment settings

testSubmitSleepJob() - Method in class org.icenigrid.gridsam.integration.common.AbstractJobSubmissionTestCase

test case: a sleep job should complete within a reasonable time

testTerminateSleepJob() - Method in class org.icenigrid.gridsam.integration.common.AbstractJobSubmissionTestCase

test case: a sleep job should complete within a reasonable time

throwsFault(String) - Static method in class org.icenigrid.gridsam.core.support.GridSAMSupport

throw a server-side SOAP exception

throwsFault(String, XmlObject) - Static method in class org.icenigrid.gridsam.core.support.GridSAMSupport

throw a server-side SOAP exception

throwsFault(String, XmlObject[]) - Static method in class org.icenigrid.gridsam.core.support.GridSAMSupport

throw a server-side SOAP exception

throwsFault(QName, String, String, XmlObject[]) - Static method in class org.icenigrid.gridsam.core.support.GridSAMSupport

throw a server-side SOAP exception

throwsFault(Exception) - Static method in class org.icenigrid.gridsam.core.util.HPCGSupport

throw a new JobManager exception to the client side.

toJobIdentifier(JobInstance) - Static method in class org.icenigrid.gridsam.core.util.HPCGSupport

convert a JobInstance object to a HPCG JobStatus document.

toJobStatus(JobInstance) - Static method in class org.icenigrid.gridsam.core.util.HPCGSupport

convert a JobInstance object to a HPCG JobStatus document

toString() - Method in class org.icenigrid.gridsam.core.JobState

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.DoneStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.JobIdentificationStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.MultiStageDRMConnector

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.TerminalStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.common.ValidatingStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemCleanupStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.FileSystemInitStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.StageInStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.StageInStatusStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.StageOutStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.TempFileSystemCleanupStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.data.TempFileSystemInitStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.drmaa.DrmaaSubmissionStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.fork.ForkStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.FileSystemCleanupStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.connector.openpbs.FileSystemInitStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultJobStage

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

Returns a string representation of the object.

toString() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PasswordAuthenticationConfig

toString() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.PublicKeyAuthenticationConfig

toString() - Method in class org.icenigrid.gridsam.core.plugin.shell.ssh.ServerConfig

toString() - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.LocalFileAgent

toXML() - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

return jsdl text.

Transaction - Interface in org.icenigrid.gridsam.core.plugin

Interface defining operations to deal with a persistence transaction

transfer(boolean) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.FTPTransferAgent

tranfer file through FTP.

transfer(boolean) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.HTTPTransferAgent

Transfer through HTTP

transfer(boolean) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.LocalFileAgent

transfer the file

transfer(boolean) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.protocol.TransferAgent

transfer file

transfer(boolean) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.VFSTransferAgent

transfer file.

TransferAgent - Interface in org.icenigrid.gridsam.core.plugin.transfer.protocol

Purpose:
this Interface statements methods for transferring files .Different protocols may have the different transmissions.

TransferAgentFactory - Class in org.icenigrid.gridsam.core.plugin.transfer.protocol

Purpose:
A Factory Class to get TransferAgent to transfer file.

TransferAgentFactory(FileJobInfo) - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.protocol.TransferAgentFactory

Constructor

triggerJob(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

triggerJobWithVolatileTrigger(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

TrueRule - Class in org.icenigrid.gridsam.core.plugin.manager.auth.simple

TrueRule() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.auth.simple.TrueRule

U

UNDEFINED - Static variable in class org.icenigrid.gridsam.core.JobState

The job state is undefined

UnknownJobException - Exception in org.icenigrid.gridsam.core

Exception thrown when a named job cannot be found

UnknownJobException() - Constructor for exception org.icenigrid.gridsam.core.UnknownJobException

Constructs a new exception with null as its detail message.

UnknownJobException(String) - Constructor for exception org.icenigrid.gridsam.core.UnknownJobException

Constructs a new exception with the specified detail message.

UnknownJobException(String, Throwable) - Constructor for exception org.icenigrid.gridsam.core.UnknownJobException

Constructs a new exception with the specified detail message and cause.

UnknownJobException(Throwable) - Constructor for exception org.icenigrid.gridsam.core.UnknownJobException

Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).

unregisterChangeListener(String, JobInstanceChangeListener) - Method in interface org.icenigrid.gridsam.core.JobManager

unregister a previously registered listener with the given job ID

unregisterChangeListener(JobInstanceChangeListener) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore

unregister a previously registered listener

unregisterChangeListener(String, JobInstanceChangeListener) - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

unregister a previously registered listener with the given job ID

unregisterChangeListener(JobInstanceChangeListener) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

unregister a previously registered listener

unschedule() - Method in interface org.icenigrid.gridsam.core.plugin.JobManagerContext

unschedule the currently executing DRMConnector task this context is associated with.

unschedule() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext

unschedule the currently executing DRMConnector task this context is associated with.

unscheduleJob(String, String) - Method in class org.icenigrid.gridsam.core.plugin.scheduler.SchedulerDelegate

UnsupportedFeatureException - Exception in org.icenigrid.gridsam.core

Exception thrown when an attribute defined in the job description is not supported

UnsupportedFeatureException() - Constructor for exception org.icenigrid.gridsam.core.UnsupportedFeatureException

Constructs a new exception with null as its detail message.

UnsupportedFeatureException(String) - Constructor for exception org.icenigrid.gridsam.core.UnsupportedFeatureException

Constructs a new exception with the specified detail message.

UnsupportedFeatureException(String, Throwable) - Constructor for exception org.icenigrid.gridsam.core.UnsupportedFeatureException

Constructs a new exception with the specified detail message and cause.

UnsupportedFeatureException(Throwable) - Constructor for exception org.icenigrid.gridsam.core.UnsupportedFeatureException

Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).

unsuspend() - Method in class org.icenigrid.gridsam.core.plugin.manager.DefaultJobManager

unsuspend the JobManager if the JobManager has previously been suspended.

unsuspend() - Method in interface org.icenigrid.gridsam.core.plugin.manager.JobManagerMBean

unsuspend the JobManager if the JobManager has previously been suspended.

UnZip(String, String) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

unzip .

UnZipEntry(File, InputStream, String, boolean) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

unzip.

UPDATE_DATEBSE_FAULT - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileJobConstants

String .

updateDot(FTPClient, String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.FTPSupport

update remotePath to String when remotePath is ".".

updateFileJobInfoInstance(FileJobInfo) - Method in interface org.icenigrid.gridsam.core.plugin.transfer.persistence.FileJobInstanceStore

Update function : update a AftJobInfo Record.

updateFileJobInfoInstance(FileJobInfo) - Method in class org.icenigrid.gridsam.core.plugin.transfer.persistence.HibernateFileJobInstanceStore

Update function : update a AftJobInfo Record.

updateJobInstance(MutableJobInstance) - Method in interface org.icenigrid.gridsam.core.plugin.JobInstanceStore

store or update a job instance object

updateJobInstance(MutableJobInstance) - Method in class org.icenigrid.gridsam.core.plugin.persistence.hibernate.HibernateJobInstanceStore

store or update a job instance object

updateString(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.FTPSupport

update String to support Chinese.

updateStringBack(String) - Static method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.FTPSupport

change to Chinese.

URI_JOB_EXITCODE - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

Property name: job exit code

URLParser - Class in org.icenigrid.gridsam.core.plugin.transfer.util

Purpose:
This Class can get the parameter from the URL.

URLParser() - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.util.URLParser

USER_HOME - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

USER_MAP_GROUP - Static variable in class org.icenigrid.gridsam.core.support.SupportContants

USER_MAP_HOMEDIR - Static variable in class org.icenigrid.gridsam.core.support.SupportContants

key of the home directory in USER_MAP.

USER_MAP_LOCALNAME - Static variable in class org.icenigrid.gridsam.core.support.SupportContants

key of the local name in USER_MAP

USERMAPINGCONFIG_CLASSNAME - Static variable in interface org.icenigrid.gridsam.core.plugin.transfer.protocol.TransferAgent

UserMapper - Interface in org.icenigrid.gridsam.core.support

Purpose:
To manage the map between global user and local user.

UserMapperSupport - Class in org.icenigrid.gridsam.core.support.omii

Purpose:
To implement UserMapper interface in OMII environment.

UserMapperSupport() - Constructor for class org.icenigrid.gridsam.core.support.omii.UserMapperSupport

default constructor.

UserMappingStage - Class in org.icenigrid.gridsam.core.plugin.connector.openpbs

Purpose:
This stage provides the pool accounts features.

UserMappingStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.openpbs.UserMappingStage

UserMappingUtil - Class in org.icenigrid.gridsam.core.hostenv

Purpose:
A Utility class, providing some usermap-related functions.

UserMappingUtil() - Constructor for class org.icenigrid.gridsam.core.hostenv.UserMappingUtil

V

valid() - Method in class org.icenigrid.gridsam.core.util.legacy.BatchJobJSDLDesc

is a valid jsdl?

validate(JobDefinitionDocument) - Static method in class org.icenigrid.gridsam.core.jsdl.JSDLSupport

validate an XML document against the JSDL schema myproxy namespace related elements are not validated currently

validate(Reader) - Static method in class org.icenigrid.gridsam.core.jsdl.JSDLSupport

validate an XML document against the JSDL schema myproxy namespace related elements are not validated currently

validate(InputStream) - Static method in class org.icenigrid.gridsam.core.jsdl.JSDLSupport

validate an XML document against the JSDL schema myproxy namespace related elements are not validated currently

validate() - Method in class org.icenigrid.gridsam.core.util.JSDLCreator

To validate whether this job object is legal.

validateRerunState(String) - Static method in class org.icenigrid.gridsam.core.util.RerunUtil

ValidatingStage - Class in org.icenigrid.gridsam.core.plugin.connector.common

A DRMConnector implementation that represents the task to validate a JSDL document associated with the current job

ValidatingStage() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.ValidatingStage

ValidationException - Exception in org.icenigrid.gridsam.core.jsdl

Exception class denoting a validation exception in the job description language

ValidationException() - Constructor for exception org.icenigrid.gridsam.core.jsdl.ValidationException

Constructs a new exception with null as its detail message.

ValidationException(String) - Constructor for exception org.icenigrid.gridsam.core.jsdl.ValidationException

Constructs a new exception with the specified detail message.

ValidationException(Throwable) - Constructor for exception org.icenigrid.gridsam.core.jsdl.ValidationException

Constructs a new exception with the specified cause and a detail message of (cause==null ? null : cause.toString()) (which typically contains the class and detail message of cause).

ValidationException(String, Throwable) - Constructor for exception org.icenigrid.gridsam.core.jsdl.ValidationException

Constructs a new exception with the specified detail message and cause.

valueForSymbol(String) - Method in class org.icenigrid.gridsam.core.plugin.manager.ManagedRegistry

vectOfItems - Variable in class org.icenigrid.gridsam.core.util.XMLConfigReader

Vector to store items keys (<item>).

Version - Class in org.icenigrid.gridsam.core

Version() - Constructor for class org.icenigrid.gridsam.core.Version

VFSSupport - Class in org.icenigrid.gridsam.core.plugin.connector.data

Support class for virtual file system

VFSSupport() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.data.VFSSupport

VFSTransferAgent - Class in org.icenigrid.gridsam.core.plugin.transfer.protocol

Purpose:
this Class implements the Interface TransferAgent.

VFSTransferAgent(FileJobInfo, FileObject, FileObject) - Constructor for class org.icenigrid.gridsam.core.plugin.transfer.protocol.VFSTransferAgent

Constructor

VMEMORY - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

W

waitFor() - Method in interface org.icenigrid.gridsam.core.plugin.shell.Process

causes the current thread to wait, if necessary, until the process represented by this Process object has terminated.

WALLTIME - Static variable in class org.icenigrid.gridsam.core.util.HPCGJobPropertyConstants

wasInStage(JobState) - Method in interface org.icenigrid.gridsam.core.JobInstance

test whether the job has been in the given state

wasInStage(JobState) - Method in class org.icenigrid.gridsam.core.plugin.persistence.common.DefaultMutableJobInstance

test whether the job has been in the given state

WEBDAV - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

WEBDAV_DELAY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

WEBDAV_RETRY - Static variable in class org.icenigrid.gridsam.core.plugin.transfer.util.FileTransferConfig

WORK_LOCATION - Static variable in class org.icenigrid.gridsam.core.util.BatchConstants

WORKING_DIRECTORY - Static variable in class org.icenigrid.gridsam.core.StandardJobProperties

working directory

writeCondorSubmissionScript(JobContext, PrintWriter) - Method in class org.icenigrid.gridsam.core.plugin.connector.condor.ShellBasedCondorSubmitStage

write the condor submission script to the print writer

writePBSSubmissionScript(JobContext, PrintWriter) - Method in class org.icenigrid.gridsam.core.plugin.connector.pbs.ShellBasedPBSSubmitStage

write the PBS submission script to the print writer

WS_ADDRESSING_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

WS_NAMING_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

the WS-Naming namespace string

WS_NAMING_NS_STRING - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

WSA_NAMESPACE_STRING - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

the WS-Addressing namespace string

X

XMLConfigReader - Class in org.icenigrid.gridsam.core.util

Reads structured resource text data from an XML file and store it on a hashtable.

XMLConfigReader(String) - Constructor for class org.icenigrid.gridsam.core.util.XMLConfigReader

TMX to Hashtable conversion.

XmlObjectCategory - Class in org.icenigrid.gridsam.core.plugin.connector.common

Groovy Category object providing added Groovy operations to XmlObject Node class.

XmlObjectCategory() - Constructor for class org.icenigrid.gridsam.core.plugin.connector.common.XmlObjectCategory

XPATH_NAMESPACES_DECLARATION - Static variable in class org.icenigrid.gridsam.core.support.GridSAMSupport

GridSAM specific XPath 2.0 namespace declaration

XPathRule - Class in org.icenigrid.gridsam.core.plugin.manager.auth.simple

XPathRule() - Constructor for class org.icenigrid.gridsam.core.plugin.manager.auth.simple.XPathRule

create an XPath rule

Z

ZipFiles(List, String, boolean) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

ZipFiles(String[], String, boolean) - Static method in class org.icenigrid.gridsam.core.util.BatchUtils

_

_openDataConnection_(int, String) - Method in class org.icenigrid.gridsam.core.plugin.transfer.protocol.NetFtpClientExtension

A B C D E F G H I J L M N O P Q R S T U V W X Z _